Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2316 ATGATGAAGAGGTTCTTGTGTTTCCTATGTAAAAATAATCATAATGGGTTTTTCCCTCTCATTATCATTCTTGGTTTTCTTCTCTTGGGTGTCGACGGAGAGATCTCCGGCGGCGGCGCTGGTGGAGGAGCAGAGAGATCATATGGTATGATAAGTTGGGATGATTTGCGTGTGGATGTTTCGTGGCGGCAGGGGATGAGCTCCGGCGAGGGGTTGGAGAATGGGACAAGAATAATTGTGGTGGATAAGGATGGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGTGGATATGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTGTATTCTTCCTGGCATTTACAGAGAGAAGGTATACATACCAATCACCAAACCATATATTTCCTTAATCGGAAACAAGAAACGAGTTACAGATACTGTTATTACATGGAACGACAAAGCTTCCGACAAAGATATGAATGGAGTCGAGCTTGGGACGTATAGAACAGCGACGGTTGCGATCGACTCTGACTACTTTTGTGCAACAGGAATCACATTTGAGAATACAATTGTTGCAAAGCCTGGAGATAAGGGAAGACAAGGTGTAGCTTTAAGAATAACAGGAGATAAGGCCATGTTTTATAGAGTAAAATTCTTAGGAGGACAAGATACACTTTTGGATGACATGGGCACACATTACTTCTATCAATGTCACATTCAAGGAAGTGTTGATTTCATATTTGGCACAGCTAGATCACTCTATGAGCAATGTGTTATAACTTCCACAGCAGAGAGCTTTGGAGCAATAGCAGCACATCATCGGGTCTCGCCAAACGATGACACTGGGTTCTCTTTCGTGCGCAGCGTAATTAATGGAAGTGGCAAAGTACTCCTGGGAAGAGCTTGGGGAAACTATTCAAGAACAATTTATTCTTACTGTTACATTGAAGATGTAATAACTCCATTAGGTTGGGATGACTGGAATGACCCATCAAGACAAAGGACAGTAGTTTTTGGGCAATATAATTGCAGGGGCAGTGGAGCTAACACACAAGGTTGGGTGCCATGGGCAAAGACTTTCAGCTACGAGGAAGTGAGACCTTTTGTAGATAGAAAATATATCAAAGGAGAACAATGGCTTAACTTATGA 1134 42.95 MMKRFLCFLCKNNHNGFFPLIIILGFLLLGVDGEISGGGAGGGAERSYGMISWDDLRVDVSWRQGMSSGEGLENGTRIIVVDKDGSGDSTTVQGAVDMVPHNNKQRVKICILPGIYREKVYIPITKPYISLIGNKKRVTDTVITWNDKASDKDMNGVELGTYRTATVAIDSDYFCATGITFENTIVAKPGDKGRQGVALRITGDKAMFYRVKFLGGQDTLLDDMGTHYFYQCHIQGSVDFIFGTARSLYEQCVITSTAESFGAIAAHHRVSPNDDTGFSFVRSVINGSGKVLLGRAWGNYSRTIYSYCYIEDVITPLGWDDWNDPSRQRTVVFGQYNCRGSGANTQGWVPWAKTFSYEEVRPFVDRKYIKGEQWLNL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37375370 37379667 + CcPI632755_09g023160.1 Cco09g2316 188773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2316 377 SUPERFAMILY Pectin lyase-like 77 376 IPR011050 -
Cco09g2316 377 ProSitePatterns Pectinesterase signature 2. 234 243 IPR033131 -
Cco09g2316 377 Gene3D - 74 377 IPR012334 -
Cco09g2316 377 Pfam Pectinesterase 79 371 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco09g2316 377 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 376 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cco09g2316 377 FunFam Pectinesterase 74 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1174 Cco-Chr7:25503856 Cco09g2316 Cco-Chr9:37375370 2.80E-66 dispersed
Cco09g0473 Cco-Chr9:4157054 Cco09g2316 Cco-Chr9:37375370 3.00E-73 dispersed
Cco09g2007 Cco-Chr9:34267550 Cco09g2316 Cco-Chr9:37375370 3.30E-54 dispersed
Cco09g2316 Cco-Chr9:37375370 Cco11g0442 Cco-Chr11:4642821 4.20E-64 dispersed
Cco09g2316 Cco-Chr9:37375370 Cco08g1677 Cco-Chr8:28212450 1.20E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2316 K01051 - csv:101209316 632.869