Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2323 ATGGGTAGCCAAGAAGCTAGACAGCCACTGTTACCAACATCGTCTAATACTGCTGGACAAAGGTTAATAGATATCCCTAGAAGCAAAGGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCTCATACAGAGATCACCTGCACCGGCAACGTTCCGGACACTGGTCCAGTTCCACGTTCAGGATTAATTTTCGGAAATATACACCCAAGTTTCAGAAGAGCAGCCTTAGTTTTAATAATATACCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGTGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATTGTGACGATGACAACTGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTACTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAGTCGGCCTAATACTGAGCGATGCAGCCGACTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCATAGGCAACAAAATGGCCATTGTGACATTAGGAAAGAAATTGATACTAATAAAGCTAGAAACAAGTGTATAGTGGTGTTTCTCATTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTATTCCTCGAGAAGTTAGATTTTATCGATGCCTTTTATTGTGTATGTTCTACGATCACGACGCTAGGCTATGGAGATAAAAGCTTCTCGACCAGGTGGGGACGTCTGTTTGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCCCAGTTTTTCCTTTCCATTGCTGAGCTAAACACTGAAAGAAGGCAAAAATCTCTGGTGAAGTGGGTTCTATGTAAAAAGGTGACAGACTTAGACCTCGAGGTTGCAGATCTAGATGATGACGGGGTCGTCGGGGCTGCAGAATTTGTCATATACAAGCTCAAGGAGATGGGAAAGATTACTGAAGATGACATTGCACCTGTGTTGAAGGAATTTGAGAATCTTGATGTTGATCAATCAGGAACCCTGTCCAAATCTGATATAACACTTGCTCAATTATCTTAA 1068 41.57 MGSQEARQPLLPTSSNTAGQRLIDIPRSKGRLRRTKSAPHADSPHTEITCTGNVPDTGPVPRSGLIFGNIHPSFRRAALVLIIYLGIGTLCFYLVRYQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSDAADYLVEKQEILLFKAFHRQQNGHCDIRKEIDTNKARNKCIVVFLILLLFIISGTAFLVFLEKLDFIDAFYCVCSTITTLGYGDKSFSTRWGRLFAIFWILISTITLAQFFLSIAELNTERRQKSLVKWVLCKKVTDLDLEVADLDDDGVVGAAEFVIYKLKEMGKITEDDIAPVLKEFENLDVDQSGTLSKSDITLAQLS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37433552 37434794 + CcPI632755_09g023230.1 Cco09g2323 188780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2323 355 ProSitePatterns EF-hand calcium-binding domain. 298 310 IPR018247 -
Cco09g2323 355 Gene3D - 73 169 - -
Cco09g2323 355 PRINTS Two pore domain K+ channel signature 116 144 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco09g2323 355 PRINTS Two pore domain K+ channel signature 232 241 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco09g2323 355 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Cco09g2323 355 SUPERFAMILY Voltage-gated potassium channels 182 293 - -
Cco09g2323 355 SUPERFAMILY EF-hand 293 350 IPR011992 -
Cco09g2323 355 Pfam Ion channel 200 272 IPR013099 -
Cco09g2323 355 Pfam Ion channel 80 160 IPR013099 -
Cco09g2323 355 FunFam Calcium-activated outward-rectifying potassium channel 1 71 166 - -
Cco09g2323 355 MobiDBLite consensus disorder prediction 1 56 - -
Cco09g2323 355 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 77 284 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Cco09g2323 355 MobiDBLite consensus disorder prediction 1 22 - -
Cco09g2323 355 Gene3D - 178 282 - -
Cco09g2323 355 MobiDBLite consensus disorder prediction 26 41 - -
Cco09g2323 355 SUPERFAMILY Voltage-gated potassium channels 73 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1185 Cco-Chr1:17517063 Cco09g2323 Cco-Chr9:37433552 3.00E-93 dispersed
Cco04g2215 Cco-Chr4:35740941 Cco09g2323 Cco-Chr9:37433552 3.20E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2323 K05389 - csv:101216032 602.053