Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2351 ATGGACAAAGCTCTCCACGTTGCCATTTCAAATTGGGCGGGCCACTCTGAGCTTCCCCTTCTTCAACAATGGAATATCTGGGTTAGGTTGGTCGTTAATGGGGGTTTGGAATTTCTGATTATGACGGAGGAAGATTCGCGGTTCAACTGTTGCAAGAAAAAAAAAACGTTTGTTGTCTTGTTCTTGATAAGGAGCCTGGTTGGTTTAGTTGGAAAAGGTCAATTTGCCATGATTCATTCTGGTTTCTTCCTTGCGGGACCGTCGTTTAATTCTGATGCTACTACGTCTTTCATATCAATTCCGGTGTCTGGAGAAGATGGCGCTACGGGGGATGATATCGGAAATGATACGTCTGATTCCGTCCCCCCTTCTTTTTGGGTTAGAACAGCGATGAAAATATCGAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCCGATCTTGGGCCGAATCCTTTCAATTCAGGTTCGTGGATGGCGATGGAATTTGTAGCTCTGTTGTTTCAGCTAATTATCTCAGCGTTTACTTTTGCCATTTCACGGGCTGAGAGTCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTACGGCCGCCGTCGGTATAATTATCTAATGCAGGGAGATGGTGACAGTCTTTCAGATATAGAACACGAACAGCAGAGGAGCAATGAATCATCAAGGTACTCACATTTGATGAACAAATGCCGCACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTTGATTCTCGCCTAGCCTCGTTCCAGAGAGCTCCCAAGCTACATCTACTCTGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCTTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTAGACGATCAAATTTCCCAGCTACCTTGCTGGAAATACAAAGCAGTGGACGCCAACATCAACCCTGGAAGTCAACCCCACAATAGCAATACAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCGCTTTTTGATCTTCAGTCTCCATCTCTGTTTTCGCCTTCCTCTCCTTTTCCTCCACCATTTCCGAAAGCTCCCCTTTTCCCTCCATTTCCTTCTATTTACACTTCCATGTCCCCTTTTCCCTCTTTCTTTCCCCTTTTCCCCATTGCCTTTGAGGCTCATTCAAGTTACCCCTTCAAAGTTAAAACCAACTGCCTGATCCTCGTTTGTTCTGGAGTGTGGCGGTTGATAAGCTCGGGCGGTAAGACTCGGAATAAGGAAAGGTCGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCGTGTAACTGTGGTGGCACTGCTTCCTTTATCTCGAATTCGTTGGTGGAAGAAGATGGTGCAGGTGCGGATGTTAGAGACGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGATAGCGATGAGAGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAATGGATCAAGATCGGATCTCAGGTCTGATCCTTTCAATTCTATCTCGTGGATGGCTATGGAGCTGGTAGCTATGGTGTTTCAGCTGGCCATCACAGTGTTTTTTCTTGCCAATTCAGAGACGGAGAATCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTAGGATGCATTCTTAGTTTGTTGCTTCTCTATGGGCGATATTGGCATCTTTATTTAATGCATGGAGACCATGTCGGCCTTTCTGAGACCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGTTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATTGTCGATTCTCGCTTCAGTTCGTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCCTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCGTTCATTCTCTTTCTGCTGCTATGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCATCAACCGACAAAGGAGCATCGGATGATCAAATATCCGAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGATAGTAACAAAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGACAGTTACCTTGTTCCCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTTTCAATCACATCTTCTTGCCCTCTCTGTAAGCAACAACTTCAAAAATAG 2529 44.25 MDKALHVAISNWAGHSELPLLQQWNIWVRLVVNGGLEFLIMTEEDSRFNCCKKKKTFVVLFLIRSLVGLVGKGQFAMIHSGFFLAGPSFNSDATTSFISIPVSGEDGATGDDIGNDTSDSVPPSFWVRTAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMEFVALLFQLIISAFTFAISRAESPVWPMRLWIGGYDLGCVLSLLLLYGRRRYNYLMQGDGDSLSDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASFQRAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSFIGYNINMGSTEKGALDDQISQLPCWKYKAVDANINPGSQPHNSNTGLPKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLFDLQSPSLFSPSSPFPPPFPKAPLFPPFPSIYTSMSPFPSFFPLFPIAFEAHSSYPFKVKTNCLILVCSGVWRLISSGGKTRNKERSFSMINSGYFVSGPSCNCGGTASFISNSLVEEDGAGADVRDDNSVALPASFWVRIAMRVSRARWFIFLRRVFHYQNGSRSDLRSDPFNSISWMAMELVAMVFQLAITVFFLANSETENPVWPMRLWIVGYDLGCILSLLLLYGRYWHLYLMHGDHVGLSETEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISELPCWRYKVSSMQPDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLSITSSCPLCKQQLQK 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37671971 37679478 + CcPI632755_09g023510.1 Cco09g2351 188808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2351 842 SMART ringv_2 795 837 IPR011016 GO:0008270(InterPro)
Cco09g2351 842 Pfam Ring finger domain 376 416 IPR001841 -
Cco09g2351 842 Pfam Ring finger domain 795 837 IPR001841 -
Cco09g2351 842 SMART ring_2 796 836 IPR001841 -
Cco09g2351 842 SMART ring_2 377 417 IPR001841 -
Cco09g2351 842 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 550 841 - -
Cco09g2351 842 ProSiteProfiles Zinc finger RING-type profile. 377 416 IPR001841 -
Cco09g2351 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 420 IPR013083 -
Cco09g2351 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 751 842 IPR013083 -
Cco09g2351 842 CDD RING-H2_RNF6-like 795 837 - -
Cco09g2351 842 SUPERFAMILY RING/U-box 791 840 - -
Cco09g2351 842 ProSiteProfiles Zinc finger RING-type profile. 796 837 IPR001841 -
Cco09g2351 842 SUPERFAMILY RING/U-box 372 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2693 Cco-Chr5:34879954 Cco09g2351 Cco-Chr9:37671971 5.00E-08 dispersed
Cco08g1449 Cco-Chr8:26351315 Cco09g2351 Cco-Chr9:37671971 8.40E-45 dispersed
Cco09g2351 Cco-Chr9:37671971 Cco10g1640 Cco-Chr10:29802448 1.10E-32 dispersed
Cco09g2351 Cco-Chr9:37671971 Cco07g1584 Cco-Chr7:29864992 2.10E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2351 - - - 0.0