Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2357 ATGCTTGTAATTCTAAGGAATCTCTTTCTTCCTCATCATTTCTTTACCATAGCCTTGCTTTTATGTGTAAAATCCCTTCTCTTTTCTTCTTGTTACTCCATTGATGAGCAGGGTAGAATTCTTCTTGAATGGAAGAATAATCTAACAAGCCCCACAGATGTTTTGCGTTCATGGAATCCGGAGGCGGCGACACCATGTTCATGGTTTGGAGTTATGTGCAACTCCAATGGAGAGGTGGTGGAGATAGTCCTGACACTAGTGGAATTGGAAGGTACATTGCCTACAAATTTTCAGGCTCTCAAGTCCTTGAGGGTCCTTGTGATCTCTGAGACGAATATTACTGGAAGAATTCCAAAAGAATTCGGAGATTATAGTGAGCTCAATGTTCTTGATCTTAGCAGAAATTACCTCTTGGGGAAAATCCCAGAAGAGATCTGCAGGCTGAGCAAGCTGCAGGATTTGTTTCTTCATAACAATGATTTTGAAGGGAACCTACCCTTGAAGATTGGAAATCTTTCGAGCCTTGTGAATTTCCAAATCTCAGACAATAATATCAATGGGGAGGTTCCAAAGAGCATTGGAATGTTGAAGAATCTTTATCTTTTCAAAGCTGGAGGGAATAAATTTCTACAGGGTGTAGTGCCAAGGGAGATTGGAAACTGCAGCAGTTTAACGGTGTTAGGCTTATCCGACACCGGAATCTACGGTCCTCTTCCTTCATCAATAGGGATGCTGCAAAAAATCCAGACCATACACATGTATAGATCACAACTTTTTGGTCCACTCCCAGAAGAGATTACGAACTGTAGTGAACTGCAGACTCTTCGACTGTATCAGAATGGTATTTCTGGACGAATACCAAGACAAATCGGGGAGATGAAAAAGCTTAGCATCCTTCTTCTATGGTTGAACTTGATGGAGGGTGAAATTCCAGAAGAAATTGGCAACTGCCAGGAACTGGTACTATTTGATTTTTCAGAAAATTCTCTAACGGGAACTATACCAAAAAGTCTAGGCCGACTTCCAAAACTCGAAGACATTCAACTAAGAATTAATCAGCTTACTGGTACAATACCACCTGAAATTTCTAATATTTCTACTTTGGTTCACCTGGAAATAGACAACAACAAATTATGGGGGGAGATACCAGTTGATATAGGTAACCTCAAGAACCTGCGTACGTTGCTACTATGGGAGAACAAATTAACAGGCCCTATTCCCATCACCCTCCCAGACTGCCCAAATCTTACTTTGATTGATTTATCTTTCAATCAGTTAACAGGTCCAATACCGACACGGATTTTCGCTTTGAAAGGACTCACCAAACTTCTTATGTTATCAAATAATCTATCAGGGATTATTCCTCCAGAAATTGGAAACTGTACCACACTATCCAGGCTAAGACTGTCTAAAAATAAGCTTGGAGGTACTATTCCATCAGAGATGGGAAATCTCAGGAACTTAGAACTTCTTGATATGGGCCAAAACCTTTTTGTTGGAGGATTTCCTTCATCCTTTTCCACATGTAACAAGCTTGAGTCTCTTGACCTACGTTCAAATAGGCTCACTAGTCTTCCAAATACTCTGCCAAAGAGCTTAGTGTATTTTAATGCATCCAACAACAGGCTTAAAGGTCAGCTCAACCCCAACATTGGAGGATTGATGGAATTAACTAAATTAGACCTCAAAAACAACCAGCTTTCAGGGAAAATCCCAGCAGAAATTGTTTCCTGTGAGAAAATCCAGTTTTTAGACCTCAGCAACAATTTCTTCTCTGGAGAACTCCCTAAGGAATTAGGTACATTTGCTTCACTTGAAATTGCTCTTAATCTAAGTTACAATCAATTCTCAGGTCAAATCCCATATGAATTCTCTGGTCTTACCAAGCTAAGTATTCTAGACCTCTCCCACAACAACTTCTCTGGGGAACTTAGCTTTCTTACAGATCTTGAAAACCTAGTCACTCTAAACATCTCCTACAACCATTTCTCTGGCAAATTGCCCGACAAACCCTTCTTTCAAAAGCTCCCTGAAAGCGCCGTTATTGGAAACAAAGATCTCATTTATGTTTCAGATGGAGGAGATACTCCTAAAGACAATAGGGAATCCAGCAATATAAGCAGAGAAGCAATACATATAGCCGTGCCTATCTTGATCAGCATAAGTGCAGTGCTGTTCTTTTTAGGATTCTACATGCTAATTCGAACCCACATGGCTCGTTTCATCCTCTTCACAGAAGGCAACAAATGGGAAATAACCCTGTTTCAAAAGCTCGATTTCTCAATCGACCACATTATAAGAAACTTAACTGCATCCAATGTGATCGGCACAGGAAGCTCCGGTGCCGTTTACAGAATCACAACCCCAAATGGGCAAACAATGGCAGTGAAGAAAATGTGGTCCACCGACGAAAATGGAGCCTTCAACACCGAAATCGAAACTTTGGGATCAATTCGACACAAGAACATAATTAGATTACTGGGTTGGGGATCCAACAGGAGTTTGAAGCTCTTGTTTTATGATTACCTTCCAAATGGAAACTTGAGCTCCCTTATCCATGGCCCTGAAAAAGGAGAAGCCGAATGGGAAGTCAGATATGAAGTCCTTTTAGGAGTGGCTCACGCTCTAGCTTATCTTCACCATGATTGTATTCCACCAATCGTACATGGCGATGTGAAAACTATGAATATCCTGCTCGGCCATGACTTCGAACCATACCTAGCCGACTTTGGGATAGCCAAAATCGTGAGTACAAAAAGCGGCAATGATAATTCAGAGACGCCATCGTTGAGACCTCAACTTGCTGGCTCTTTCGGCTACATGGCCCCTGAACAAGGGTCGATGTTGAGAGTTACAGAGAAGAGCGATGTGTATAGCTTCGGTGTGGTGATAATGGAAGTTCTAACAGGGCGGCACCCGCTGGACCCGACTTTACCAGGAGGATCCAATTTGGTGCAATGGGTTCAAGATCATTTCGCCACACACCGAAACACAGCCGACATTTTCGATTCAAAGCTCAGAGGAAGAACCGATCCCACAATCCACGAAATGATTCAAACCCTAGCCGTCGCATTGGTCTGTGCCAGCGTTAAGGCCGACGATCGACCGCCTATGAAAGATGTCGTCACCATGCTCGAGGAGATTCGACATGTCGAATCAGGAAGAGCTGCTACCGACGTCTCCATGCCGGAAATGGCGGTAGTAGTTCAATCGCCGCCGTAG 3222 42.52 MLVILRNLFLPHHFFTIALLLCVKSLLFSSCYSIDEQGRILLEWKNNLTSPTDVLRSWNPEAATPCSWFGVMCNSNGEVVEIVLTLVELEGTLPTNFQALKSLRVLVISETNITGRIPKEFGDYSELNVLDLSRNYLLGKIPEEICRLSKLQDLFLHNNDFEGNLPLKIGNLSSLVNFQISDNNINGEVPKSIGMLKNLYLFKAGGNKFLQGVVPREIGNCSSLTVLGLSDTGIYGPLPSSIGMLQKIQTIHMYRSQLFGPLPEEITNCSELQTLRLYQNGISGRIPRQIGEMKKLSILLLWLNLMEGEIPEEIGNCQELVLFDFSENSLTGTIPKSLGRLPKLEDIQLRINQLTGTIPPEISNISTLVHLEIDNNKLWGEIPVDIGNLKNLRTLLLWENKLTGPIPITLPDCPNLTLIDLSFNQLTGPIPTRIFALKGLTKLLMLSNNLSGIIPPEIGNCTTLSRLRLSKNKLGGTIPSEMGNLRNLELLDMGQNLFVGGFPSSFSTCNKLESLDLRSNRLTSLPNTLPKSLVYFNASNNRLKGQLNPNIGGLMELTKLDLKNNQLSGKIPAEIVSCEKIQFLDLSNNFFSGELPKELGTFASLEIALNLSYNQFSGQIPYEFSGLTKLSILDLSHNNFSGELSFLTDLENLVTLNISYNHFSGKLPDKPFFQKLPESAVIGNKDLIYVSDGGDTPKDNRESSNISREAIHIAVPILISISAVLFFLGFYMLIRTHMARFILFTEGNKWEITLFQKLDFSIDHIIRNLTASNVIGTGSSGAVYRITTPNGQTMAVKKMWSTDENGAFNTEIETLGSIRHKNIIRLLGWGSNRSLKLLFYDYLPNGNLSSLIHGPEKGEAEWEVRYEVLLGVAHALAYLHHDCIPPIVHGDVKTMNILLGHDFEPYLADFGIAKIVSTKSGNDNSETPSLRPQLAGSFGYMAPEQGSMLRVTEKSDVYSFGVVIMEVLTGRHPLDPTLPGGSNLVQWVQDHFATHRNTADIFDSKLRGRTDPTIHEMIQTLAVALVCASVKADDRPPMKDVVTMLEEIRHVESGRAATDVSMPEMAVVVQSPP 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37725253 37728569 + CcPI632755_09g023570.1 Cco09g2357 188814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2357 1073 SUPERFAMILY L domain-like 56 397 - -
Cco09g2357 1073 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 34 188 - -
Cco09g2357 1073 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 843 1062 - -
Cco09g2357 1073 FunFam Putative LRR receptor-like serine/threonine-protein kinase 754 842 - -
Cco09g2357 1073 SUPERFAMILY L domain-like 391 677 - -
Cco09g2357 1073 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515(InterPro)
Cco09g2357 1073 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515(InterPro)
Cco09g2357 1073 SMART serkin_6 769 1045 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2357 1073 Gene3D Ribonuclease Inhibitor 33 207 IPR032675 -
Cco09g2357 1073 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2357 1073 ProSiteProfiles Protein kinase domain profile. 769 1048 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2357 1073 Pfam Leucine Rich Repeat 652 669 IPR001611 GO:0005515(InterPro)
Cco09g2357 1073 Pfam Leucine Rich Repeat 581 601 IPR001611 GO:0005515(InterPro)
Cco09g2357 1073 Pfam Leucine Rich Repeat 368 389 IPR001611 GO:0005515(InterPro)
Cco09g2357 1073 Pfam Leucine Rich Repeat 415 434 IPR001611 GO:0005515(InterPro)
Cco09g2357 1073 Pfam Leucine Rich Repeat 609 627 IPR001611 GO:0005515(InterPro)
Cco09g2357 1073 Pfam Leucine Rich Repeat 557 577 IPR001611 GO:0005515(InterPro)
Cco09g2357 1073 Gene3D Ribonuclease Inhibitor 530 607 IPR032675 -
Cco09g2357 1073 Gene3D Ribonuclease Inhibitor 432 529 IPR032675 -
Cco09g2357 1073 Pfam Protein kinase domain 772 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2357 1073 Gene3D Phosphorylase Kinase; domain 1 748 842 - -
Cco09g2357 1073 Gene3D Ribonuclease Inhibitor 208 431 IPR032675 -
Cco09g2357 1073 SUPERFAMILY Protein kinase-like (PK-like) 760 1048 IPR011009 -
Cco09g2357 1073 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Cco09g2357 1073 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 526 692 - -
Cco09g2357 1073 PANTHER OS04G0122200 PROTEIN 440 1047 IPR051809 -
Cco09g2357 1073 SMART LRR_typ_2 554 578 IPR003591 -
Cco09g2357 1073 SMART LRR_typ_2 414 437 IPR003591 -
Cco09g2357 1073 SMART LRR_typ_2 627 650 IPR003591 -
Cco09g2357 1073 SMART LRR_typ_2 341 365 IPR003591 -
Cco09g2357 1073 SMART LRR_typ_2 148 172 IPR003591 -
Cco09g2357 1073 SMART LRR_typ_2 509 532 IPR003591 -
Cco09g2357 1073 SMART LRR_typ_2 389 413 IPR003591 -
Cco09g2357 1073 Gene3D Transferase(Phosphotransferase) domain 1 843 1065 - -
Cco09g2357 1073 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 431 525 - -
Cco09g2357 1073 Gene3D Ribonuclease Inhibitor 608 692 IPR032675 -
Cco09g2357 1073 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524(InterPro)
Cco09g2357 1073 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 208 422 - -
Cco09g2357 1073 ProSiteProfiles Leucine-rich repeat profile. 511 532 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1479 Cco-Chr1:26563343 Cco09g2357 Cco-Chr9:37725253 2.80E-92 dispersed
Cco09g0985 Cco-Chr9:9315606 Cco09g2357 Cco-Chr9:37725253 7.60E-90 dispersed
Cco09g2357 Cco-Chr9:37725253 Cco10g0762 Cco-Chr10:12065143 6.40E-65 dispersed
Cco09g2357 Cco-Chr9:37725253 Cco06g1921 Cco-Chr6:29450132 2.50E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87123 PF00069 Pkinase 9.60E-36 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2357 - - - 0.0