Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2422 ATGGCGGCCAAATCTGTATCTCAAAATCGAATCAGAGCCAAACTCCATTTCTTCTATGCAATTCTTCTGCTGCAGTTTGCTACCTTCGGATTGGCAGCCACAGCCAAGCTTCATCCAGAAGAAGTGAAAGCTTTGAAAGAGATCGAGAAGAAGATAGGGAAAAACGATTGGAATTTTAGCGTAGATCCTTGCAGTGGAGAAGGAAAATGGCGAGTCGTTAATGGAAGAAAAGGATTTGAAAGCTCCGTCACCTGTGATTGCTCTTTCAACCACAACTCCACTTGCCGTATCGTCGCCATAGCTCTGAAGTCCCAGAATCTATCAGGCATTGTGCCACCAGAGTTTTCCAAGCTTCGCTTCCTCAAACAGCTAGACCTCAGTCGAAACTGTCTCACTGGTTCTATTCCTTCACAATGGGCTACCATGCGATTGGTAGAACTCTCTTTCATGGGAAACAAATTGTCTGGCCCATTCCCGAAAGTTCTTACTAATATCACCACCCTCAGAAACCTGAGCATCGAAGGAAATCAATTTTCTGGCCGAATTCCGCCAGAGGTCGGAAAACTAGTTAGTTTGGAAAAATTAGTTCTGTCATCAAATGGCCTCACCGGAGAATTGCCTAAAGCACTAGCGAAATTGTCGAACTTAACTGATGTGAGGATAAGTGACAACAACTTCTCTGGAAAGATACCTGAGTTCATTAGTAATTGGGCACAGATTGAAAAACTGCATATACAAGGCTGCTCCCTCGAGGGGCCTATACCCTTAAGTATCTCCACCATGACAAGTTTAACTGATCTGAGAATATCTGACTTAAAAGGTGGAAGGTCTCCTTTTCCGTCGTTGAGCAAAATGAAATCCCTGAAGACTCTGATACTGAGGAAGTGCTTAATTTTTGGAGAAGTACCGAAATACATCGGGGACATGAAAAAATTGAAAAACTTAGACCTCAGTTACAATGACTTGACTGGCGAAGTTCCTGCATCTTTAGAACGACTGGAAAAAATAGATTACATAGATCTTTCTAATAACAACTTCACTTGGGAAAACTCAAGCCCAGCTGAGTGTCCTCGTGGTAGTGTAACTAGAATCCATCCCTGCCTAAAAAGGAACTTTCCGTGTTCTGCATCAAGGGAACAGCATCACTACTCATTGCACATTAACTGTGGCGATAAAGAAGCATTTGTAAGGGGTGAAAGGTATGAAGCGGATAGAGAAGGTGCTTCAATGTTTTATACTGGTCAGAATTGGGCTTTTAGCAGCACGGGAAGCTTTATGGACAATGATGTTGATGCTGATAACTACATCATAACAAATACATCTGCTCTTTCAAATGTCTCTGTGACTGATTCAGAACTGTACAAAAAAGCAAGAAACTCTCCTCAATCTCTTACATACTATGGGCTATGTCTCATAAATGGGAATTATACTGTTAAACTCCACTTTGCAGAGATTGTATTTATAAATGACAGTTCATTCAACAGTCTGGGGAGGCGAGTTTTTGATGTGTACATTCAGGAAAAGCTAGTCCTGAAAGATTTTGATATAGAACATGAAGCAGGGGGTACTGGTAAGCCCATTATGAAAACATTTACTGCAGTTGTCACAAGTCATACATTGAAAATTCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATTCCACTTAGAGGAAATTATGGTCCTCTGATATCAGCTATTTCTGTAGATCCCAATTTTACACCTCCTAAGAACCACGTGAAGAAGCATCACACCATCATAATTATTGGGACAGCAGCAGCAGCAGCTTTTGTTCTCCTTCTTCTGGTGCTATGCATTATGAGGAGGAACGGATGGCCGGGAGGCAAGGCATCCGTATATAAAGAGCTTAGAGGTATAGATCTGCAAACAGGATTATTTACAATAAGACAGATTAAAGCAGCCACTAAAAATTTTGATGCTGCGAACAAAGTTGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTCTCTTGTCAGATGGTACTATAATTGCAGTCAAGCAGCTCTCGTCAAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCCGCACTGCAACATCCAAATCTTGTCAAGCTTTATGGATGTTGTGTTGATGGGAACCAACTAATGTTGATTTATGAATACATGGAAAATAATTGCTTATCACGTGCCCTTTTCAGAAATGACCCAGCTTCTAGATTGAGATTGGACTGGCCCACCAGGCAGAAAATTTGTCTGGGAATAGCTAGAGGTTTGGCCTATCTGCATGAGGAGTCAAGACTAAAAATCGTACATAGGGATATCAAGACAAGTAATGTATTGCTTGATAAGGATTTCAATGCTAAAATTTCTGATTTTGGCTTGGCTAAGCTTCATGAAGATGACAATACCCATATCAGCACTAGGGTTGCTGGAACCATTGGTTATATGGCTCCTGAATATGCAATGCGTGGATGCTTGACCTGCAAAGCTGATGTTTATAGCTTCGGAGTTGTTGCCTTGGAAATTGTCAGTGGCAAAAGCAATACCAACTACAGGCCTAAAGAGGAATTTGTTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAGGGAAGCCTATTGGAGTTGGTGGATCCAGCCTTGGGCTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTGAATGTGGCTCTCCTCTGCACCAACGCATCCCCAACTCTGCGGCCTCTAATGTCCCAAGTCGTCAGCATGCTCGAAGGTCGAACTCCGGTGCAAGCACTTCTTTCTGACCCAGGATTTTCAGCCATCAATTCCAAATTAAAGGCTCTCAGAAATCACTTTTGGCAACAATTGAGCCCAACTCACAGTTTATCATTGGACGATTTCCCTAGTGATTCCTTGAGTTCGAATGTGGACCCGGAGGCAGAAGAGAATTACAATCTTGTAAGACCCCATTCTGTTAACATGACTGGAACAAATTAG 2979 41.99 MAAKSVSQNRIRAKLHFFYAILLLQFATFGLAATAKLHPEEVKALKEIEKKIGKNDWNFSVDPCSGEGKWRVVNGRKGFESSVTCDCSFNHNSTCRIVAIALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTGSIPSQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGRIPPEVGKLVSLEKLVLSSNGLTGELPKALAKLSNLTDVRISDNNFSGKIPEFISNWAQIEKLHIQGCSLEGPIPLSISTMTSLTDLRISDLKGGRSPFPSLSKMKSLKTLILRKCLIFGEVPKYIGDMKKLKNLDLSYNDLTGEVPASLERLEKIDYIDLSNNNFTWENSSPAECPRGSVTRIHPCLKRNFPCSASREQHHYSLHINCGDKEAFVRGERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIITNTSALSNVSVTDSELYKKARNSPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGRRVFDVYIQEKLVLKDFDIEHEAGGTGKPIMKTFTAVVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTPPKNHVKKHHTIIIIGTAAAAAFVLLLLVLCIMRRNGWPGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFRNDPASRLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDDNTHISTRVAGTIGYMAPEYAMRGCLTCKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTHSLSLDDFPSDSLSSNVDPEAEENYNLVRPHSVNMTGTN 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38454164 38465173 + CcPI632755_09g024220.1 Cco09g2422 188879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2422 992 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 614 720 - -
Cco09g2422 992 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 43 206 - -
Cco09g2422 992 Gene3D Phosphorylase Kinase; domain 1 616 720 - -
Cco09g2422 992 FunFam Putative LRR receptor-like serine/threonine-protein kinase 721 929 - -
Cco09g2422 992 Gene3D - 380 571 - -
Cco09g2422 992 SMART serkin_6 645 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2422 992 CDD STKc_IRAK 651 919 - -
Cco09g2422 992 Gene3D Transferase(Phosphotransferase) domain 1 721 926 - -
Cco09g2422 992 ProSitePatterns Protein kinases ATP-binding region signature. 651 673 IPR017441 GO:0005524(InterPro)
Cco09g2422 992 Gene3D Ribonuclease Inhibitor 276 358 IPR032675 -
Cco09g2422 992 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 382 572 - -
Cco09g2422 992 Pfam Malectin domain 384 567 IPR021720 -
Cco09g2422 992 Pfam Protein tyrosine and serine/threonine kinase 648 859 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2422 992 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 30 932 IPR051824 -
Cco09g2422 992 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515(InterPro)
Cco09g2422 992 Pfam Leucine Rich Repeat 191 213 IPR001611 GO:0005515(InterPro)
Cco09g2422 992 Pfam Leucine Rich Repeat 121 140 IPR001611 GO:0005515(InterPro)
Cco09g2422 992 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515(InterPro)
Cco09g2422 992 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 207 273 - -
Cco09g2422 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2422 992 SUPERFAMILY Protein kinase-like (PK-like) 630 918 IPR011009 -
Cco09g2422 992 ProSiteProfiles Protein kinase domain profile. 645 927 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2422 992 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515(InterPro)
Cco09g2422 992 SUPERFAMILY L domain-like 83 347 - -
Cco09g2422 992 Gene3D Ribonuclease Inhibitor 38 275 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2422 Cco-Chr9:38454164 Cco11g1782 Cco-Chr11:30528443 3.70E-200 dispersed
Cco10g0313 Cco-Chr10:3662558 Cco09g2422 Cco-Chr9:38454164 4.20E-46 dispersed
Cco11g0067 Cco-Chr11:708474 Cco09g2422 Cco-Chr9:38454164 6.50E-44 dispersed
Cco09g2422 Cco-Chr9:38454164 Cco11g1781 Cco-Chr11:30512746 3.80E-197 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87124 PF07714 PK_Tyr_Ser-Thr 3.70E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2422 - - - 0.0