Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g2423 | ATGACAGCCATTGCAGTTCACCAGTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGACCACTCCATGGTTGCATTTTGTCCAAACAATAATGAAGTTCACATTTATAAATCATCACAAGACAACTGGGAGAGAGTATATGTTCTTCAAAAGCATGATCAGCTTATCTCTGGGATAGACTGGAGTGTTAGGTCAAACAGAATTGTGACTGCATCTCATGATCGGAATTCGTATGTTTGGAACCTTGAAGGATTGGAGTGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTCTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGGAGTGGGGCAAAAACTGTTTGCATCTGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAGCTTATCAGAAAAAGACATGATTCTTCTGTGACAAATGTTGCTTGGCATCCCAATAATCTGCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATCTTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAGAGCTGGCGCATTTTCGGATTCAAAATTTGGAGAGTTAATTGTTCAGCTTGATCTCTCATTCTCTTGGGCATTTGGCGTAAAGTGGTCACCAAGTGGCAATACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTCGTAGATGAAGTCGGTCCTTCTCCTCTAGCCCAGAATGTTGCATTCCGAGATTTGCCTCTTCGTGATATACTATTTGTTTCTGAGAGAATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGTTCTTCCTCCCTGGCTGAATGCTCAGGTCCCAGTGCCCCCCTTCTGGGCCATGCGGGGCTCACATTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCGAGGCAAGGCGTTGGAAATGATTCAGTTGAATCTTCAAGATTGCGCGGATGTGTCCACGAGAATTGTATAAGGGGTTTCCACTATAAAGCGGTTCAGCACTTCAGGTTTGTTAAAAGGAAGAGATTGTTCGACTTCTTGTTCATAAATCTTTATGTTTATGTCTGGAAAATGATTGCAACTTATGAAAAGGCTGCTTTTAAATCAAAGCTATCTGCCCTGACCTTACAGAATCTTGCTCTTGGAACTTGGCACTTGGCACAGTCACAGTCACGTGCTTTGTATATTATAGCAGCTGCTTCTTCCTTCAGTTTTCTCTGTGCTCTGTACTCAGCGGCGAATATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTTTCTCGCTTCCCTCTCCATCTTCCCTCCAAACCATTCTTCTTTCACTCCAAACAAACCCAACTTTCATCTTCACATCCCATTCCCAATTCCACTCTCACAGACCAATTTCCCACTTCCATTTCTTCCCAATCCCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTCCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGAGTCCTATCTCAGTCGCCTCCGAGCTTTGGAGCCTCACCTCAAGTCATTTCTCTACATCTCTGACACCGTCCTCTCTGATGCCCGTGAGATCGATGACAAAATTCACAGAAATGAGGAACTGGGTCCTTTGGCTGGGGTGCTTGTGGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTCGGATTCTTGATGGGTATCGGCCACCATTTGATGCTACGGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGTTCTACTGAAGGCTCTTCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGAGTACCGGGAGGATCATCAGGAGGGTCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTAGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGCTTGAAACCAACCTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATCTCTGGTCACGATACACTTGATGCCACTAGTAGTAAACGAGAGGTTCCTGATTTCACATCGCAATTTTCTGCTGTTGATTCATTGGAGTCTAAACCCTTAAAAGGATTGAGGATTGGCCTAATTCGTGAAACCCTTGATAATGGCGTTGATGGTCAAGTAAATTCTGCTATACGTGCTGCTGCTTCACATCTAGAAGAACTAGGATGTTCCATAAATGAGGTATCACTGCCATCATTCTCTCTTGGGTTGCCTGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCTCGATATGATGGTGTCAGATATGGAAATCAAGCTGTTGCTGATGAGTTAACTGGTCTTTATGAAAATTCCCGAGCAGCAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACCATTATTCAGAAAAGCTTCAGAGCAGCATTAGATGAAAATGACATCTTAATATCACCTGCTGCTCCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGACGATCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTAGCTGGACTACCTGCATTGGTTTTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGATTTTGATGAGGGTAAACTTCTTAAAGTGGGACACATCTTTGAGCAAACTCTTGCAGACTGCAGATTTGTTCCACCCGTCCTAGCCGATGACATTAGTCTACAAGATCGCTGTCCCTTTGGAATCTCGGTCAATTCATTGTTCCGATCTATTCCATCTGTTCACCGACGGATCTCCGGTCGTTCTGTACTTCTCCGACAGCAGATATTGAAAAAGATGTCGGGCCAAAGCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCGATGAAAGCTCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTTCTCAAAAAGAAGAGTGATGCTTTGACCGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCACAGCTAAGGAATCAATGGGGGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAATATCAAGCATATTGTCCTTGAGAATGTCCAAAGTGCAGCTATCAAGATTCGATCTCGGCAGGAGAATATTGCTGGTGTAAAGCTCCCAAAATTTGAACATTATTCTGATGGTGAGACTAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGTCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCCTCACTCCAGACGTCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAACGCTCTAGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATTCAGGGTTATAAGAGAAGGGAAATTGAGAAACAACGTGCCAATGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAGGATATCTTTGCAAAAGGGTGTCTCCATAAGTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGATGAGGATATTATTTTCTGA | 3843 | 44.18 | MTAIAVHQFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSSQDNWERVYVLQKHDQLISGIDWSVRSNRIVTASHDRNSYVWNLEGLEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSRAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLAQNVAFRDLPLRDILFVSERMVIGVGFDCNPMAFAADERGICSSSLAECSGPSAPLLGHAGLTFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCIRGFHYKAVQHFRFVKRKRLFDFLFINLYVYVWKMIATYEKAAFKSKLSALTLQNLALGTWHLAQSQSRALYIIAAASSFSFLCALYSAANMLSTLQPPRCSLSRFPLHLPSKPFFFHSKQTQLSSSHPIPNSTLTDQFPTSISSQSLHSQILSIRHSLLSRQITATQLAESYLSRLRALEPHLKSFLYISDTVLSDAREIDDKIHRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVKRIKELGGIVVGKTNLDEFGMGSSTEGSSFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHAISGHDTLDATSSKREVPDFTSQFSAVDSLESKPLKGLRIGLIRETLDNGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAVADELTGLYENSRAAGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDENDILISPAAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGADFDEGKLLKVGHIFEQTLADCRFVPPVLADDISLQDRCPFGISVNSLFRSIPSVHRRISGRSVLLRQQILKKMSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLFAEEQLAERISLQKGVSISSAHNLLSAAAEKDEDIIF | 1280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38467165 | 38483733 | + | CcPI632755_09g024230.1 | Cco09g2423 | 188880 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g2423 | 1280 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 50 | 84 | IPR001680 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | ProSitePatterns | Amidases signature. | 631 | 662 | IPR020556 | - | |
Cco09g2423 | 1280 | NCBIfam | V-type ATP synthase subunit D | 1028 | 1230 | IPR002699 | GO:0046961(InterPro) | |
Cco09g2423 | 1280 | Gene3D | - | 4 | 350 | IPR015943 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | Hamap | Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. | 491 | 966 | IPR004412 | GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro) | |
Cco09g2423 | 1280 | FunFam | V-type proton ATPase subunit D | 1020 | 1217 | - | - | |
Cco09g2423 | 1280 | SUPERFAMILY | Amidase signature (AS) enzymes | 487 | 972 | IPR036928 | - | |
Cco09g2423 | 1280 | SMART | WD40_4 | 87 | 126 | IPR001680 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | SMART | WD40_4 | 43 | 82 | IPR001680 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | SMART | WD40_4 | 2 | 38 | IPR001680 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | SMART | WD40_4 | 132 | 172 | IPR001680 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | SMART | WD40_4 | 193 | 232 | IPR001680 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | PANTHER | TRANSAMIDASE | 472 | 964 | IPR000120 | GO:0003824(InterPro) | |
Cco09g2423 | 1280 | Gene3D | Amidase signature (AS) domain | 484 | 968 | IPR036928 | - | |
Cco09g2423 | 1280 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 50 | 84 | - | - | |
Cco09g2423 | 1280 | Gene3D | - | 1019 | 1217 | - | - | |
Cco09g2423 | 1280 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 140 | 172 | IPR001680 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | Pfam | WD domain, G-beta repeat | 45 | 82 | IPR001680 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | Pfam | WD domain, G-beta repeat | 141 | 171 | IPR001680 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | NCBIfam | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA | 493 | 965 | IPR004412 | GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro) | |
Cco09g2423 | 1280 | SUPERFAMILY | WD40 repeat-like | 11 | 267 | IPR036322 | GO:0005515(InterPro) | |
Cco09g2423 | 1280 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 69 | 83 | IPR019775 | - | |
Cco09g2423 | 1280 | FunFam | Actin-related protein 2/3 complex subunit | 4 | 357 | - | - | |
Cco09g2423 | 1280 | Pfam | Amidase | 505 | 955 | IPR023631 | - | |
Cco09g2423 | 1280 | Pfam | ATP synthase subunit D | 1036 | 1227 | IPR002699 | GO:0046961(InterPro) |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g2423 | K02433 | - | csv:101212627 | 991.875 |