Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2423 ATGACAGCCATTGCAGTTCACCAGTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGACCACTCCATGGTTGCATTTTGTCCAAACAATAATGAAGTTCACATTTATAAATCATCACAAGACAACTGGGAGAGAGTATATGTTCTTCAAAAGCATGATCAGCTTATCTCTGGGATAGACTGGAGTGTTAGGTCAAACAGAATTGTGACTGCATCTCATGATCGGAATTCGTATGTTTGGAACCTTGAAGGATTGGAGTGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTCTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGGAGTGGGGCAAAAACTGTTTGCATCTGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAGCTTATCAGAAAAAGACATGATTCTTCTGTGACAAATGTTGCTTGGCATCCCAATAATCTGCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATCTTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAGAGCTGGCGCATTTTCGGATTCAAAATTTGGAGAGTTAATTGTTCAGCTTGATCTCTCATTCTCTTGGGCATTTGGCGTAAAGTGGTCACCAAGTGGCAATACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTCGTAGATGAAGTCGGTCCTTCTCCTCTAGCCCAGAATGTTGCATTCCGAGATTTGCCTCTTCGTGATATACTATTTGTTTCTGAGAGAATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGTTCTTCCTCCCTGGCTGAATGCTCAGGTCCCAGTGCCCCCCTTCTGGGCCATGCGGGGCTCACATTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCGAGGCAAGGCGTTGGAAATGATTCAGTTGAATCTTCAAGATTGCGCGGATGTGTCCACGAGAATTGTATAAGGGGTTTCCACTATAAAGCGGTTCAGCACTTCAGGTTTGTTAAAAGGAAGAGATTGTTCGACTTCTTGTTCATAAATCTTTATGTTTATGTCTGGAAAATGATTGCAACTTATGAAAAGGCTGCTTTTAAATCAAAGCTATCTGCCCTGACCTTACAGAATCTTGCTCTTGGAACTTGGCACTTGGCACAGTCACAGTCACGTGCTTTGTATATTATAGCAGCTGCTTCTTCCTTCAGTTTTCTCTGTGCTCTGTACTCAGCGGCGAATATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTTTCTCGCTTCCCTCTCCATCTTCCCTCCAAACCATTCTTCTTTCACTCCAAACAAACCCAACTTTCATCTTCACATCCCATTCCCAATTCCACTCTCACAGACCAATTTCCCACTTCCATTTCTTCCCAATCCCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTCCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGAGTCCTATCTCAGTCGCCTCCGAGCTTTGGAGCCTCACCTCAAGTCATTTCTCTACATCTCTGACACCGTCCTCTCTGATGCCCGTGAGATCGATGACAAAATTCACAGAAATGAGGAACTGGGTCCTTTGGCTGGGGTGCTTGTGGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTCGGATTCTTGATGGGTATCGGCCACCATTTGATGCTACGGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGTTCTACTGAAGGCTCTTCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGAGTACCGGGAGGATCATCAGGAGGGTCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTAGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGCTTGAAACCAACCTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATCTCTGGTCACGATACACTTGATGCCACTAGTAGTAAACGAGAGGTTCCTGATTTCACATCGCAATTTTCTGCTGTTGATTCATTGGAGTCTAAACCCTTAAAAGGATTGAGGATTGGCCTAATTCGTGAAACCCTTGATAATGGCGTTGATGGTCAAGTAAATTCTGCTATACGTGCTGCTGCTTCACATCTAGAAGAACTAGGATGTTCCATAAATGAGGTATCACTGCCATCATTCTCTCTTGGGTTGCCTGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCTCGATATGATGGTGTCAGATATGGAAATCAAGCTGTTGCTGATGAGTTAACTGGTCTTTATGAAAATTCCCGAGCAGCAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACCATTATTCAGAAAAGCTTCAGAGCAGCATTAGATGAAAATGACATCTTAATATCACCTGCTGCTCCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGACGATCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTAGCTGGACTACCTGCATTGGTTTTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGATTTTGATGAGGGTAAACTTCTTAAAGTGGGACACATCTTTGAGCAAACTCTTGCAGACTGCAGATTTGTTCCACCCGTCCTAGCCGATGACATTAGTCTACAAGATCGCTGTCCCTTTGGAATCTCGGTCAATTCATTGTTCCGATCTATTCCATCTGTTCACCGACGGATCTCCGGTCGTTCTGTACTTCTCCGACAGCAGATATTGAAAAAGATGTCGGGCCAAAGCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCGATGAAAGCTCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTTCTCAAAAAGAAGAGTGATGCTTTGACCGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCACAGCTAAGGAATCAATGGGGGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAATATCAAGCATATTGTCCTTGAGAATGTCCAAAGTGCAGCTATCAAGATTCGATCTCGGCAGGAGAATATTGCTGGTGTAAAGCTCCCAAAATTTGAACATTATTCTGATGGTGAGACTAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGTCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCCTCACTCCAGACGTCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAACGCTCTAGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATTCAGGGTTATAAGAGAAGGGAAATTGAGAAACAACGTGCCAATGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAGGATATCTTTGCAAAAGGGTGTCTCCATAAGTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGATGAGGATATTATTTTCTGA 3843 44.18 MTAIAVHQFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSSQDNWERVYVLQKHDQLISGIDWSVRSNRIVTASHDRNSYVWNLEGLEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSRAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLAQNVAFRDLPLRDILFVSERMVIGVGFDCNPMAFAADERGICSSSLAECSGPSAPLLGHAGLTFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCIRGFHYKAVQHFRFVKRKRLFDFLFINLYVYVWKMIATYEKAAFKSKLSALTLQNLALGTWHLAQSQSRALYIIAAASSFSFLCALYSAANMLSTLQPPRCSLSRFPLHLPSKPFFFHSKQTQLSSSHPIPNSTLTDQFPTSISSQSLHSQILSIRHSLLSRQITATQLAESYLSRLRALEPHLKSFLYISDTVLSDAREIDDKIHRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVKRIKELGGIVVGKTNLDEFGMGSSTEGSSFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHAISGHDTLDATSSKREVPDFTSQFSAVDSLESKPLKGLRIGLIRETLDNGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAVADELTGLYENSRAAGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDENDILISPAAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGADFDEGKLLKVGHIFEQTLADCRFVPPVLADDISLQDRCPFGISVNSLFRSIPSVHRRISGRSVLLRQQILKKMSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLFAEEQLAERISLQKGVSISSAHNLLSAAAEKDEDIIF 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38467165 38483733 + CcPI632755_09g024230.1 Cco09g2423 188880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2423 1280 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 84 IPR001680 GO:0005515(InterPro)
Cco09g2423 1280 ProSitePatterns Amidases signature. 631 662 IPR020556 -
Cco09g2423 1280 NCBIfam V-type ATP synthase subunit D 1028 1230 IPR002699 GO:0046961(InterPro)
Cco09g2423 1280 Gene3D - 4 350 IPR015943 GO:0005515(InterPro)
Cco09g2423 1280 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 491 966 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Cco09g2423 1280 FunFam V-type proton ATPase subunit D 1020 1217 - -
Cco09g2423 1280 SUPERFAMILY Amidase signature (AS) enzymes 487 972 IPR036928 -
Cco09g2423 1280 SMART WD40_4 87 126 IPR001680 GO:0005515(InterPro)
Cco09g2423 1280 SMART WD40_4 43 82 IPR001680 GO:0005515(InterPro)
Cco09g2423 1280 SMART WD40_4 2 38 IPR001680 GO:0005515(InterPro)
Cco09g2423 1280 SMART WD40_4 132 172 IPR001680 GO:0005515(InterPro)
Cco09g2423 1280 SMART WD40_4 193 232 IPR001680 GO:0005515(InterPro)
Cco09g2423 1280 PANTHER TRANSAMIDASE 472 964 IPR000120 GO:0003824(InterPro)
Cco09g2423 1280 Gene3D Amidase signature (AS) domain 484 968 IPR036928 -
Cco09g2423 1280 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 84 - -
Cco09g2423 1280 Gene3D - 1019 1217 - -
Cco09g2423 1280 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 172 IPR001680 GO:0005515(InterPro)
Cco09g2423 1280 Pfam WD domain, G-beta repeat 45 82 IPR001680 GO:0005515(InterPro)
Cco09g2423 1280 Pfam WD domain, G-beta repeat 141 171 IPR001680 GO:0005515(InterPro)
Cco09g2423 1280 NCBIfam Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA 493 965 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Cco09g2423 1280 SUPERFAMILY WD40 repeat-like 11 267 IPR036322 GO:0005515(InterPro)
Cco09g2423 1280 ProSitePatterns Trp-Asp (WD) repeats signature. 69 83 IPR019775 -
Cco09g2423 1280 FunFam Actin-related protein 2/3 complex subunit 4 357 - -
Cco09g2423 1280 Pfam Amidase 505 955 IPR023631 -
Cco09g2423 1280 Pfam ATP synthase subunit D 1036 1227 IPR002699 GO:0046961(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2423 K02433 - csv:101212627 991.875