Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g2432 | ATGCTCTCTTTTTTAGCTGCAATGCTAATAATATCCATTGTTCTGGTCTTGAGGAGCAATAAGAGAAGCAAAAATATACCACCTGGGCAAATGGGTCTTCCTTGGATTGGCGAAACAATGGCTTTTTACAAAGCCCAACGTAAAAACAGAGTATTTGAAGACTTTGTTAGGCCTCGAGTGGCTAAACATGGAAAAATCTTCAAAACAAGCTTAATGGGATCTCCAACAGTGATTGTAAATGGAGCTGAAGCCAATAGATTTTTCTTGTCAAATGAGTTTAAGTTAGTGGTGAGTTCATGGCCATCGGGTTCTGTTCAGTTGATGGGTGAAGAATGCATTATGCAAAAGCAAGGTGAAAGGCACAGAATTGTGCGTGCTCTTATTGCTGCAAGTCTTTCTAGTTCGAGTCTGGAAGTTATGATGCCTAAATTGTGCAATACAATTAAGGTTTATTTGGACACTAAATGGGTTGGTTGTGACACAATTGGTCTATTCCATTCAGCAAAAGTATTGACTTTTACCATAGTGTTTGAGTGTTTGATGGGTATTAAAGTGGAACCACGTGTGTTGATGACATTCGAGAGAGTTTTGGAGGGTGTTTTTGCACCACCGTTCAGGTTTCCAGGCACAAGGTTTTCAAGAGCCAAGAAAGCAAGGTTGGAGATAGAGAAAATGCTAAGGGAAGTGGTGAGAGAGAAGAGGAGGAGAATTGAAGGAAAGTTAGAAGAAGAAGAATGTGGGTCATTGCTTTCAAGGATGGTGAGAGCAATGATGAGAGGGGAGATCAATGAAACGGAAGTCATAGACAATGTGGTTTTGCTTGTTTTTGCAGCTCATGATACAACTTCCTTTGCCATTGCCATGACTTTCAAGATGTTAGCTCAACATTCAAACTGCTACTCACTTCTTCTCCAGGAACACACTGACATAGTGAGAAGCAAGGGGCCAAGCCAGAATTTGACGATGGAAGATATAAAGAAGATGAAATATACTTGGCAAGTAGCTCGTGAGAGCATTAGACTGTTTCCTCCTATATTTGGTTCTTTCAGGAAAGCCATTTCAGACATTGAATATGAGAGATTTTTCATTCCCAAAGGATGGAAGGTATTGTGGACGACGTATGGAACACATTACGAAGAAGAGTACTTTGAAGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCTCAGTATGTTTATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTGGCGAAATTGAACATCCTCATCTTTATACATTTGGTTGTAACTCGTTATGATTGGAGTTTAGTCCATCCAGATGAGCCAATCATAATGGATCCTCTCCCTGTCCCTTCTCATGGAATGCCAATTAAGATTTCTCCAAAATCAGAAGTTTGTCCCAATGTTCACCAAATGTAA | 1425 | 40.56 | MLSFLAAMLIISIVLVLRSNKRSKNIPPGQMGLPWIGETMAFYKAQRKNRVFEDFVRPRVAKHGKIFKTSLMGSPTVIVNGAEANRFFLSNEFKLVVSSWPSGSVQLMGEECIMQKQGERHRIVRALIAASLSSSSLEVMMPKLCNTIKVYLDTKWVGCDTIGLFHSAKVLTFTIVFECLMGIKVEPRVLMTFERVLEGVFAPPFRFPGTRFSRAKKARLEIEKMLREVVREKRRRIEGKLEEEECGSLLSRMVRAMMRGEINETEVIDNVVLLVFAAHDTTSFAIAMTFKMLAQHSNCYSLLLQEHTDIVRSKGPSQNLTMEDIKKMKYTWQVARESIRLFPPIFGSFRKAISDIEYERFFIPKGWKVLWTTYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHLVVTRYDWSLVHPDEPIIMDPLPVPSHGMPIKISPKSEVCPNVHQM | 474 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 38544503 | 38546758 | + | CcPI632755_09g024320.1 | Cco09g2432 | 188889 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g2432 | 474 | SUPERFAMILY | Cytochrome P450 | 20 | 463 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | Coils | Coil | 215 | 235 | - | - | |
| Cco09g2432 | 474 | PRINTS | E-class P450 group I signature | 266 | 283 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | PRINTS | E-class P450 group I signature | 60 | 79 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | PRINTS | E-class P450 group I signature | 372 | 396 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | PRINTS | E-class P450 group I signature | 413 | 436 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | PRINTS | E-class P450 group I signature | 403 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | Gene3D | Cytochrome P450 | 16 | 464 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 406 | 415 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco09g2432 | 474 | PRINTS | P450 superfamily signature | 413 | 424 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | PRINTS | P450 superfamily signature | 333 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | PRINTS | P450 superfamily signature | 277 | 294 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | PRINTS | P450 superfamily signature | 404 | 413 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2432 | 474 | FunFam | Taxadiene 5-alpha hydroxylase | 17 | 464 | - | - | |
| Cco09g2432 | 474 | PANTHER | CYTOCHROME P450 26 | 25 | 442 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Cco09g2432 | 474 | CDD | CYP90-like | 59 | 463 | - | - | |
| Cco09g2432 | 474 | Pfam | Cytochrome P450 | 27 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g1643 | Cco-Chr5:22601435 | Cco09g2432 | Cco-Chr9:38544503 | 3.40E-87 | dispersed | |
| Cco06g1606 | Cco-Chr6:26629366 | Cco09g2432 | Cco-Chr9:38544503 | 1.40E-72 | dispersed | |
| Cco09g2150 | Cco-Chr9:35890580 | Cco09g2432 | Cco-Chr9:38544503 | 3.40E-38 | dispersed | |
| Cco09g2432 | Cco-Chr9:38544503 | Cco11g0504 | Cco-Chr11:5313500 | 3.30E-50 | dispersed | |
| Cco09g2432 | Cco-Chr9:38544503 | Cco05g2251 | Cco-Chr5:31238407 | 1.50E-58 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g2432 | - | - | - | 0.0 |