Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2440 ATGATCTCCGATTCTGTTCTTCCCCTCTTTTTTATCCGTTTCTTCATCGTTCAGCAATTGGGTTTAGGGCATTCATCGAGTAGGAATGCAAAAAGTCTCTATCCTCGATCTGATTCTGGTTACTTTATGGTAGCTGGTGGTGTCGGTTGTTCTGGTTTGGTGATTGAGTTTTTGGTTCAGGTTTTGGGATTGCAGGTGGGGAAGTGTATGAGGGATTTGATTTGGGTAATTTTATTATGTTCCGTGGAGGATTCGGGAAGGAGCATAAGGAGGGATTGTGGGTTTGTGATCCGGAGCAGGGGTAGATGGGATTTCATCTTCACTGTTCTCCAACCTGGGTTTGAGACTTTAAGGAAATGCAGACCGATCACCAATTCTGCAGAATTGGACTTTTTCTCTGAATACGGCGATGCCAACAGATTCAAAGTTCGCGAAGTTATTGGAAAGGGGAGTTATGGTGTGGTTTGTTCAGCTGTTGACACTCTCACTAATGAAAAAGTGGCAATAAAGAAGATACACGATATTTTTGAACATGTATCTGATGCTGCCCGTATTCTTCGTGAGATAAAGCTGCTCAGGCTTCTACGTCATCCTGATATTGTTGAAATTAAACACATTATGTTACCACCTTCTCGTAGGGGGTTCAAAGATATTTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCCAACGATGATTTAACAAAAGAGCACTATCAATTTTTCCTTTATCAGCTACTCCGTGCGCTGAAATATATTCACACAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATCTGTGATTTTGGATTGGCTAGAGTTGCTTTTAGTGACACCCCAACTACAATATTTTGGACGGACTATGTTGCTACTAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCTGCCATTGACATTTGGAGTATTGGCTGCATATTTGCTGAAGTACTGACCGGGAAACCACTTTTTCCTGGTAAAAATATTGTTCATCAGCTTGATTTGATGACAGATCTCCTTGGAACACCGTCATTGGATACCATTTCTCGGGTAAGAAATGAAAAGGCCAGGAGGTACTTAACTAGTATGAGGAAGAAGCAGCCCATACCCTTTTCTCAGAAGTTCCCTAATGCTGATCCTCTAGCCCTGCAATTGCTACAACGATTGCTTGCATTTGATCCAAAGGATCGACCTACTGCTGAAGAGGCTTTGGCAGATCCTTACTTTAAGGGGCTGGCAAAAGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCAAAGGTGGAGTTTGAATTTGAAAGGAGAAAGGTCACAAAGGATGACATTCGCGAGCTAATATTCCTTGAGATACTAGAATACCATCCTCAACTGCTAAAAGACTACTTAAATGGAACTGAGAGATCAAATTTTCTTTATCCAAGTGCACTGGATCAGTTCAAAAAGCAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGTTTATCCTTTAGAAAGAAAACATGCATCTCTTCCTAGGTCTTCAGTACAGTCAAATACCATTCCTCCTAAAGTTACATCAAATATTGTTTCCTTTAAAGACCGATATGCGCCAGCAGGTTCGTTCAGCAGTCAGCATTTCAGAGATCCAGCAGCGCAGAGGATTGCTGCTGCTCAAGCCAAGCCTGGAAGAATCTCGGGCCCGGTCATGCCATATGACAGTGGAAGTATTGTCAAAGATGCCTACGACCCGAGAATGTTAATTAGAAGTGCCTTCCCTTCTCATGCTATCCATCCAACATATTATTATCAGCAATCTTGCGGCCAAAATGAAGAAAGATCAGCAACGGGGGCTGAACAGGACACATCCTTGCAATGTAAACAATCCCCTCAATGTGGAATGGCTGCCAAATTAGCAGGAGATACAGCTGCTACTGGTGCTTTCTCAAATCCTTTCTTTATGGCGCGTGTAGGCATGCCCAAGATCGGAAACAATGACTGTCCTGCGCGTTTGCAGGTAAGCGCTCAATATGATGCTGGAGCTGTTGCTGCTGCAACTACCACCACCCATCGAAACACTGGCACGGTCGAAATTCAGACTTTGAAACTCACTATCATTATATTGGCCATTGAAGAGGAAGCTGAGCTTATTGATGGATAG 2211 42.56 MISDSVLPLFFIRFFIVQQLGLGHSSSRNAKSLYPRSDSGYFMVAGGVGCSGLVIEFLVQVLGLQVGKCMRDLIWVILLCSVEDSGRSIRRDCGFVIRSRGRWDFIFTVLQPGFETLRKCRPITNSAELDFFSEYGDANRFKVREVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPIPFSQKFPNADPLALQLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFLEILEYHPQLLKDYLNGTERSNFLYPSALDQFKKQFAHLEDNGGKSGPVYPLERKHASLPRSSVQSNTIPPKVTSNIVSFKDRYAPAGSFSSQHFRDPAAQRIAAAQAKPGRISGPVMPYDSGSIVKDAYDPRMLIRSAFPSHAIHPTYYYQQSCGQNEERSATGAEQDTSLQCKQSPQCGMAAKLAGDTAATGAFSNPFFMARVGMPKIGNNDCPARLQVSAQYDAGAVAAATTTTHRNTGTVEIQTLKLTIIILAIEEEAELIDG 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38590643 38596308 - CcPI632755_09g024400.1 Cco09g2440 188897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2440 736 Gene3D Transferase(Phosphotransferase) domain 1 227 455 - -
Cco09g2440 736 Pfam Protein kinase domain 142 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2440 736 ProSitePatterns MAP kinase signature. 176 279 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2440 736 Gene3D Phosphorylase Kinase; domain 1 156 478 - -
Cco09g2440 736 FunFam Mitogen-activated protein kinase 227 455 - -
Cco09g2440 736 ProSitePatterns Protein kinases ATP-binding region signature. 147 171 IPR017441 GO:0005524(InterPro)
Cco09g2440 736 CDD STKc_TDY_MAPK 140 477 - -
Cco09g2440 736 SMART serkin_6 141 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2440 736 FunFam Mitogen-activated protein kinase 133 234 - -
Cco09g2440 736 SUPERFAMILY Protein kinase-like (PK-like) 138 436 IPR011009 -
Cco09g2440 736 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 140 471 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco09g2440 736 ProSiteProfiles Protein kinase domain profile. 141 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1633 Cco-Chr6:26950374 Cco09g2440 Cco-Chr9:38590643 7.30E-197 dispersed
Cco07g0716 Cco-Chr7:13272636 Cco09g2440 Cco-Chr9:38590643 1.10E-184 dispersed
Cco07g1108 Cco-Chr7:24651475 Cco09g2440 Cco-Chr9:38590643 1.00E-203 dispersed
Cco08g1664 Cco-Chr8:28095412 Cco09g2440 Cco-Chr9:38590643 5.30E-88 dispersed
Cco09g2440 Cco-Chr9:38590643 Cco10g0115 Cco-Chr10:1042883 1.90E-44 dispersed
Cco02g1964 Cco-Chr2:32571013 Cco09g2440 Cco-Chr9:38590643 2.30E-245 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87125 PF00069 Pkinase 1.50E-66 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2440 - - - 0.0