Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2450 ATGTCAAATGATGAAGGCAAAAATGTGTACCAGCAGTATGATCCATTCCAATACAACCAGTTGGATATGAACCGTTCGATCTTCCATCAACAAGCGGCGGCGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGATACCTCGTTGGATTACAACAGCCTGTCGAAGGCGTTCGACGTGTCGTGCTGTTCATCCGAAGTCATTTCTGCAGTGGACGACATGTCGAAATCAAAGAAGGCTTCGACGACCACCCCAAATTCTTCAGTGTCGTCGTCGTCTAATGAAGCTGTAGTTGAAGAAGATTCAGTCAAGAGCAACAAAGAGGACATAAAAGGGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAGCATAACAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCACCTTGAAGATGGTTATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCCAGAAGCTACTATAGATGCACCAGCCAAAAATGTGTAGTGAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTAGTGATTACTACATATGAAGGCCAACACAACCACCATTGTCCAGCTACACTCCGAGGCCATTCTGCAGGGATCATGTCGTCTCCGTTCTACGCATCAGCATCAACATCGGTAACGGCAGCCTCGTCGGGGCCTACGATTCCACAAGAACTCTTCTCACATTTGTTACCGACAAATAACTGCCAAACCGACCCAGCCTCAATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG 879 43.46 MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQAAALDPALMSFTNFFDTSLDYNSLSKAFDVSCCSSEVISAVDDMSKSKKASTTTPNSSVSSSSNEAVVEEDSVKSNKEDIKGCENKDEEKSKKQNSITKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASTSVTAASSGPTIPQELFSHLLPTNNCQTDPASMMYQNLSLQQHLQMPDHYGLLQDLFTQK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38670080 38671888 + CcPI632755_09g024500.1 Cco09g2450 188907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2450 292 MobiDBLite consensus disorder prediction 101 139 - -
Cco09g2450 292 MobiDBLite consensus disorder prediction 75 139 - -
Cco09g2450 292 Pfam WRKY DNA -binding domain 153 210 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g2450 292 SUPERFAMILY WRKY DNA-binding domain 145 212 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g2450 292 MobiDBLite consensus disorder prediction 75 100 - -
Cco09g2450 292 FunFam WRKY transcription factor 57 138 212 - -
Cco09g2450 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 220 IPR044810 GO:0003700(InterPro)
Cco09g2450 292 SMART WRKY_cls 152 211 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g2450 292 Gene3D WRKY domain 136 213 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g2450 292 ProSiteProfiles WRKY domain profile. 147 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2216 Cco-Chr4:35774089 Cco09g2450 Cco-Chr9:38670080 6.90E-42 dispersed
Cco06g0446 Cco-Chr6:4905637 Cco09g2450 Cco-Chr9:38670080 4.90E-37 dispersed
Cco08g1183 Cco-Chr8:23597915 Cco09g2450 Cco-Chr9:38670080 5.80E-37 dispersed
Cco08g1542 Cco-Chr8:27112548 Cco09g2450 Cco-Chr9:38670080 9.20E-17 dispersed
Cco09g0485 Cco-Chr9:4277218 Cco09g2450 Cco-Chr9:38670080 1.60E-31 dispersed
Cco09g2450 Cco-Chr9:38670080 Cco10g1145 Cco-Chr10:23911845 3.30E-32 dispersed
Cco02g1967 Cco-Chr2:32622667 Cco09g2450 Cco-Chr9:38670080 1.40E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60023 PF03106 WRKY 5.40E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2450 - - - 0.0