Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2451 ATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTATTAATTCTCGGTATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAATTTCTCTATTTCTCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCATATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCGCATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGGGAAGGGGGTTATGGCATCGTCTACAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATCGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGGCAACATGGCACCCTTACTTGGGAGGCTCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTCCACAGAGACATAAAATCGAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAACGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACGGGAAGGGACCCAGTGGACTATGGTCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCATTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTTGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGTCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGAATCCAGTCAAGGCGAGGTCGGAAGTAAACCAGGTGAATCACAAAACAGACCCGTAAATGCATGA 1530 43.86 MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGIVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEVGSKPGESQNRPVNA 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38678000 38681006 - CcPI632755_09g024510.1 Cco09g2451 188908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2451 509 PANTHER OS01G0323000 PROTEIN 7 489 IPR052232 -
Cco09g2451 509 CDD STKc_IRAK 200 466 - -
Cco09g2451 509 Coils Coil 214 234 - -
Cco09g2451 509 FunFam Putative receptor-like serine/threonine-protein kinase 270 480 - -
Cco09g2451 509 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524(InterPro)
Cco09g2451 509 MobiDBLite consensus disorder prediction 463 509 - -
Cco09g2451 509 SMART serkin_6 194 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2451 509 Pfam Protein kinase domain 197 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2451 509 MobiDBLite consensus disorder prediction 483 509 - -
Cco09g2451 509 SUPERFAMILY Protein kinase-like (PK-like) 178 471 IPR011009 -
Cco09g2451 509 MobiDBLite consensus disorder prediction 463 482 - -
Cco09g2451 509 Gene3D Transferase(Phosphotransferase) domain 1 270 484 - -
Cco09g2451 509 FunFam Putative receptor-like protein kinase 176 269 - -
Cco09g2451 509 ProSiteProfiles Protein kinase domain profile. 194 452 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2451 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2451 509 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1595 Cco-Chr2:28600451 Cco09g2451 Cco-Chr9:38678000 1.50E-151 dispersed
Cco06g0424 Cco-Chr6:4647797 Cco09g2451 Cco-Chr9:38678000 1.30E-153 dispersed
Cco08g1791 Cco-Chr8:29047106 Cco09g2451 Cco-Chr9:38678000 2.30E-145 dispersed
Cco09g2451 Cco-Chr9:38678000 Cco11g0541 Cco-Chr11:5714802 1.80E-78 dispersed
Cco02g1968 Cco-Chr2:32629180 Cco09g2451 Cco-Chr9:38678000 2.10E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87126 PF00069 Pkinase 1.60E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2451 - - - 0.0