Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g2451 | ATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTATTAATTCTCGGTATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAATTTCTCTATTTCTCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCATATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCGCATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGGGAAGGGGGTTATGGCATCGTCTACAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATCGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGGCAACATGGCACCCTTACTTGGGAGGCTCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTCCACAGAGACATAAAATCGAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAACGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACGGGAAGGGACCCAGTGGACTATGGTCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCATTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTTGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGTCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGAATCCAGTCAAGGCGAGGTCGGAAGTAAACCAGGTGAATCACAAAACAGACCCGTAAATGCATGA | 1530 | 43.86 | MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGIVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEVGSKPGESQNRPVNA | 509 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38678000 | 38681006 | - | CcPI632755_09g024510.1 | Cco09g2451 | 188908 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g2451 | 509 | PANTHER | OS01G0323000 PROTEIN | 7 | 489 | IPR052232 | - | |
Cco09g2451 | 509 | CDD | STKc_IRAK | 200 | 466 | - | - | |
Cco09g2451 | 509 | Coils | Coil | 214 | 234 | - | - | |
Cco09g2451 | 509 | FunFam | Putative receptor-like serine/threonine-protein kinase | 270 | 480 | - | - | |
Cco09g2451 | 509 | ProSitePatterns | Protein kinases ATP-binding region signature. | 200 | 223 | IPR017441 | GO:0005524(InterPro) | |
Cco09g2451 | 509 | MobiDBLite | consensus disorder prediction | 463 | 509 | - | - | |
Cco09g2451 | 509 | SMART | serkin_6 | 194 | 465 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g2451 | 509 | Pfam | Protein kinase domain | 197 | 463 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g2451 | 509 | MobiDBLite | consensus disorder prediction | 483 | 509 | - | - | |
Cco09g2451 | 509 | SUPERFAMILY | Protein kinase-like (PK-like) | 178 | 471 | IPR011009 | - | |
Cco09g2451 | 509 | MobiDBLite | consensus disorder prediction | 463 | 482 | - | - | |
Cco09g2451 | 509 | Gene3D | Transferase(Phosphotransferase) domain 1 | 270 | 484 | - | - | |
Cco09g2451 | 509 | FunFam | Putative receptor-like protein kinase | 176 | 269 | - | - | |
Cco09g2451 | 509 | ProSiteProfiles | Protein kinase domain profile. | 194 | 452 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g2451 | 509 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 316 | 328 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g2451 | 509 | Gene3D | Phosphorylase Kinase; domain 1 | 176 | 269 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1595 | Cco-Chr2:28600451 | Cco09g2451 | Cco-Chr9:38678000 | 1.50E-151 | dispersed | |
Cco06g0424 | Cco-Chr6:4647797 | Cco09g2451 | Cco-Chr9:38678000 | 1.30E-153 | dispersed | |
Cco08g1791 | Cco-Chr8:29047106 | Cco09g2451 | Cco-Chr9:38678000 | 2.30E-145 | dispersed | |
Cco09g2451 | Cco-Chr9:38678000 | Cco11g0541 | Cco-Chr11:5714802 | 1.80E-78 | dispersed | |
Cco02g1968 | Cco-Chr2:32629180 | Cco09g2451 | Cco-Chr9:38678000 | 2.10E-220 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87126 | PF00069 | Pkinase | 1.60E-47 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g2451 | - | - | - | 0.0 |