Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2460 ATGGCCGCGTCAGAGATGATGATGAAAAAGGGTGGTAGTGGACCACCGCCTTGCGCTGCTTGCAAGCTTCTGCGCCGGCGGTGTGCTCCGGACTGCGTTTTTGCTCCTTATTTCCCTTCCGATCAGCCTCACAAATTCTCAAGTGTTCACAAGGTTTTTGGAGCCAGCAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCATCAAAGGAGCGATGCTGTGAGTTCAATGGTATACGAGGCAAACGCAAGAATTCGAGATCCGGTATACGGATGCGTGGGAACGATATCGTGTCTACAACGGCAAGTAGATGCATTGCAACAACAACTAGCAATGACACAGGCCCAGCTAGTTCAATTGAAAATGGGCCAATTTACATCAACATCACAAGCATCATCTAGTACGGATGACCTCCTTCCTCCTCCGCCCAATATCAATGTGGGCGCATCACCATCCTTGTGGTCTTGCTAG 471 49.68 MAASEMMMKKGGSGPPPCAACKLLRRRCAPDCVFAPYFPSDQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQRQVDALQQQLAMTQAQLVQLKMGQFTSTSQASSSTDDLLPPPPNINVGASPSLWSC 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38769630 38771843 + CcPI632755_09g024600.1 Cco09g2460 188917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2460 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 125 - -
Cco09g2460 156 MobiDBLite consensus disorder prediction 129 156 - -
Cco09g2460 156 Coils Coil 96 123 - -
Cco09g2460 156 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Cco09g2460 156 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2066 Cco-Chr2:33588911 Cco09g2460 Cco-Chr9:38769630 4.90E-38 dispersed
Cco07g0478 Cco-Chr7:5715761 Cco09g2460 Cco-Chr9:38769630 2.70E-39 dispersed
Cco09g2460 Cco-Chr9:38769630 Cco10g1378 Cco-Chr10:26834204 1.30E-35 dispersed
Cco02g1984 Cco-Chr2:32785538 Cco09g2460 Cco-Chr9:38769630 4.10E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60025 PF03195 LOB 9.80E-44 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2460 - - - 0.0