Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g2464 | ATGTTAGGCACGTGGGCCGGGCTTGCCTACGGCTTGCTTGCAGTTGGTGTGGTGGTCTCAGCGTGGGCTTTGGGCCGTAGCCAACCACACAATCGTCGCAACTGGCAACGGGCGCAGCGGCAGACCCAAGAAATAATAAGAGGTTTCATCTTTGTTCTTTGTGCTATTGCTTCCATCGTCACCCACCTGATTGTTTTGTCTCGAGCTCAGAATTCAACTCTACCCCCCACCGATCCTGATCAAGCAAGAGCTCTGAATTCCATATTTCGACAATGGCGTATATCGGCTCCATCAGGGGCGTGGAATATAAGCGGAAATCTGTGCAGTGGGAGAGCTGTCGACACTACAACCCCCATCGATAGTAATGGAAACCTCAATCCTCTTATAAAATGTGATTGCTCAGCCAACAATGGTGCTACTTGCCTCATTACTCAACTGCACGTTTATGCGATAAATGTTGTTGGTGTACTCCCACCAGAGCTATGGACATTAACTTCCCTCACCTATCTGAAGCTGGATCAAAATTTCTTGACAGGAACATTATCTGCATCTGTTGGCAATCTCACAGAATTGCGAACCTTGAGCCTGGGCATTGATGCATTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTTCTAAACTAGAAGTATTGGCATTCGGTTCCAACAATTTCTCTGGTCCCTTACCGTCAGAGCTTGGAAATCTTTCTATGTTAAGGGAGCTATACATTGATAGCTCTGGAGTTTCTGGTGGTATTCCTCCATCATTTTCAAGTCTGAGAAACTTGCAGACAGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAGTTGGACAAGGCTCACATCTCTGAGGTTTCAAGGAAACTCTTTTACAGGTCCTATACCATCGACGTTTTCAAACTTGACATCTCTGACTGAGTTGAGAATAGGTGATTTATCCAATGGAAGCTCTTCTCTGGCATTCATCAGTAATATGACATCTCTAACTATCCTGGTGTTGAGAAATAATAATATGACTGGTTCAATTCCATCCAACATTGGAGGATTCCGTAGACTTACCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAGTTTGAGTTCACTGTCACACTTGATTCTTGGAAATAACAAGTTAAATGGGACCCTACCTACACAGAAGATTGCATCACTTCTAAATATAGACTTGTCATATAACGATTTATCAGGGAGCTTTCCTGCTTGGATCAACGAGCAAAACTTACAACTAAATTTAGTCGCCAACAATTTCACAATTGACAGTGCTAGTATCAGTGGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGGTCGTCCAATATATTCTGATTTTGGGATCAAGTGTGGAGGTCCACAGATCAGAAGTTCATCAGGGATTTTGTTTGAAAGAGAAAATGAGACTCTCGGTCCTGCTACGTACTTTGTTACTGAGTCACAAAGGTGGGCCGTTAGTAATACTGGATACTTTACTGGGACCAACAATCCTCAATACACAGCCAATACGTTGTCTCAATTCCCAAACACCCTTGACACAGAACTTTTTCAGACACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAATGGCAACTACACTGTGAACCTTCATTTTGCAGAGATAGCTTTCCCAGATTCAAATACATGGCAAAGCCGTGGGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTGTTACAGAATTTTGATATTAGAAAGCAGGCAGGTGGGTCTTTCCTTGCTGTCAGAAAGAATTTTACGGCTGAAGTTACAGAGAACTTCCTGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTAAACAGGGTGATTTTGGACCCGCTGTTTCAGCCATCAGTGCTACCCCAGATTTTGTACCAACTGTCAGTAATGTTCCTCCAAGTACTAAGGAGAATAGAACGGGCCTAATCGTAGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGCGCAGTTTTCTTTGTTGTTCAGAGAAGGAAAAGGCGTCGCGCCTATGAAGATGAAGAGCTCCTAGGAATAGACACTAGACCGTACACTTTTAGTTTTTCTGAATTAAGGAGTGCTACAAATGACTTTAATTCATCCAACAAACTTGGCGAGGGCGGATTTGGACCTGTTTACAAGGGAACATTAAATGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAATTATATGGATGTTGCATTGAGGCTGATAAACGTCTCCTTGTTTATGAGTTTCTTGAAAACAAGAGTCTTGACCAAGCATTATTTGGACAAAAACATTTGATTATTGATTGGCCAACACGTTTTGAGATATGCGTGGGTGTAGCAAGGGGCCTCACTTACCTTCATGAGGAATCGAGACTTCGCATAGTGCACAGAGATGTTAAGGCCAGTAACATCCTGCTTGATGGTAATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTCTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGACCCAAGCTTAGAGCAAGACAAAGTATATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGAATTATCAGAGTTCAATAAGGAGGAAGTAAAAAGGGTGATCGGTGTAGCTCTTCTGTGTACTCAAACATCTCCAGCCCTTCGGCCATCGATGTCCCGCGTGGTGGCAATGCTGACTGGAGACATTGAAGTGGCCGCTGTAACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGATGACATTACAAGCTTTATAGATACTCCATCAACTGAAGAACCTGATACTGGCCGTTATGCATCGACAAGTTCGAGTATTGTTGATACACATCGCTCACCAGCCAATGCTTCTGAACCAATGCTTCGTGGATTATTAGGAGAGGGTAGGTGA | 3228 | 43.56 | MLGTWAGLAYGLLAVGVVVSAWALGRSQPHNRRNWQRAQRQTQEIIRGFIFVLCAIASIVTHLIVLSRAQNSTLPPTDPDQARALNSIFRQWRISAPSGAWNISGNLCSGRAVDTTTPIDSNGNLNPLIKCDCSANNGATCLITQLHVYAINVVGVLPPELWTLTSLTYLKLDQNFLTGTLSASVGNLTELRTLSLGIDALSGELPKELGSLSKLEVLAFGSNNFSGPLPSELGNLSMLRELYIDSSGVSGGIPPSFSSLRNLQTVWASDNEFTGRIPDFIGSWTRLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISNMTSLTILVLRNNNMTGSIPSNIGGFRRLTQLDLSFNNLTGEIPSSLFSLSSLSHLILGNNKLNGTLPTQKIASLLNIDLSYNDLSGSFPAWINEQNLQLNLVANNFTIDSASISGLPSGLNCLQRNFPCNRGRPIYSDFGIKCGGPQIRSSSGILFERENETLGPATYFVTESQRWAVSNTGYFTGTNNPQYTANTLSQFPNTLDTELFQTQRLSASSLRYYGLGLENGNYTVNLHFAEIAFPDSNTWQSRGRRLFDIYIQGNRVLQNFDIRKQAGGSFLAVRKNFTAEVTENFLEIHLFWAGKGTCCIPKQGDFGPAVSAISATPDFVPTVSNVPPSTKENRTGLIVGLVVGLGSVFFLIIGAVFFVVQRRKRRRAYEDEELLGIDTRPYTFSFSELRSATNDFNSSNKLGEGGFGPVYKGTLNDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGQKHLIIDWPTRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLEWAWYLHENNCELEMVDSELSEFNKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIEVAAVTSKPGYLTDWKFDDITSFIDTPSTEEPDTGRYASTSSSIVDTHRSPANASEPMLRGLLGEGR | 1075 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38806239 | 38819467 | - | CcPI632755_09g024640.1 | Cco09g2464 | 188921 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g2464 | 1075 | FunFam | Os05g0263100 protein | 82 | 321 | - | - | |
Cco09g2464 | 1075 | SUPERFAMILY | L domain-like | 144 | 421 | - | - | |
Cco09g2464 | 1075 | ProSiteProfiles | Protein kinase domain profile. | 736 | 1010 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g2464 | 1075 | Gene3D | Transferase(Phosphotransferase) domain 1 | 812 | 1015 | - | - | |
Cco09g2464 | 1075 | Pfam | Malectin domain | 471 | 653 | IPR021720 | - | |
Cco09g2464 | 1075 | MobiDBLite | consensus disorder prediction | 1034 | 1058 | - | - | |
Cco09g2464 | 1075 | CDD | STKc_IRAK | 742 | 1006 | - | - | |
Cco09g2464 | 1075 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 812 | 1016 | - | - | |
Cco09g2464 | 1075 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 322 | 445 | - | - | |
Cco09g2464 | 1075 | Gene3D | Ribonuclease Inhibitor | 322 | 446 | IPR032675 | - | |
Cco09g2464 | 1075 | MobiDBLite | consensus disorder prediction | 1034 | 1075 | - | - | |
Cco09g2464 | 1075 | Gene3D | Ribonuclease Inhibitor | 100 | 321 | IPR032675 | - | |
Cco09g2464 | 1075 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 856 | 868 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g2464 | 1075 | FunFam | Leucine-rich repeat receptor-like protein kinase | 467 | 657 | - | - | |
Cco09g2464 | 1075 | SUPERFAMILY | Protein kinase-like (PK-like) | 719 | 1038 | IPR011009 | - | |
Cco09g2464 | 1075 | Pfam | Protein tyrosine and serine/threonine kinase | 739 | 1003 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco09g2464 | 1075 | FunFam | Leucine-rich repeat receptor-like protein kinase | 705 | 811 | - | - | |
Cco09g2464 | 1075 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 61 | 1030 | IPR051824 | GO:0005886(PANTHER) | |
Cco09g2464 | 1075 | Gene3D | - | 470 | 657 | - | - | |
Cco09g2464 | 1075 | SMART | serkin_6 | 736 | 1004 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g2464 | 1075 | Pfam | Leucine Rich Repeat | 334 | 355 | IPR001611 | GO:0005515(InterPro) | |
Cco09g2464 | 1075 | Pfam | Leucine Rich Repeat | 286 | 308 | IPR001611 | GO:0005515(InterPro) | |
Cco09g2464 | 1075 | Pfam | Leucine Rich Repeat | 214 | 236 | IPR001611 | GO:0005515(InterPro) | |
Cco09g2464 | 1075 | Pfam | Leucine Rich Repeat | 358 | 380 | IPR001611 | GO:0005515(InterPro) | |
Cco09g2464 | 1075 | Gene3D | Phosphorylase Kinase; domain 1 | 697 | 811 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1585 | Cco-Chr6:26425038 | Cco09g2464 | Cco-Chr9:38806239 | 6.90E-89 | dispersed | |
Cco07g1105 | Cco-Chr7:24612574 | Cco09g2464 | Cco-Chr9:38806239 | 2.10E-90 | dispersed | |
Cco09g2464 | Cco-Chr9:38806239 | Cco11g1782 | Cco-Chr11:30528443 | 1.70E-142 | dispersed | |
Cco11g0070 | Cco-Chr11:727981 | Cco09g2464 | Cco-Chr9:38806239 | 1.10E-22 | dispersed | |
Cco09g2464 | Cco-Chr9:38806239 | Cco11g1783 | Cco-Chr11:30552622 | 2.40E-149 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87127 | PF07714 | PK_Tyr_Ser-Thr | 6.00E-46 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g2464 | - | - | - | 0.0 |