Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2464 ATGTTAGGCACGTGGGCCGGGCTTGCCTACGGCTTGCTTGCAGTTGGTGTGGTGGTCTCAGCGTGGGCTTTGGGCCGTAGCCAACCACACAATCGTCGCAACTGGCAACGGGCGCAGCGGCAGACCCAAGAAATAATAAGAGGTTTCATCTTTGTTCTTTGTGCTATTGCTTCCATCGTCACCCACCTGATTGTTTTGTCTCGAGCTCAGAATTCAACTCTACCCCCCACCGATCCTGATCAAGCAAGAGCTCTGAATTCCATATTTCGACAATGGCGTATATCGGCTCCATCAGGGGCGTGGAATATAAGCGGAAATCTGTGCAGTGGGAGAGCTGTCGACACTACAACCCCCATCGATAGTAATGGAAACCTCAATCCTCTTATAAAATGTGATTGCTCAGCCAACAATGGTGCTACTTGCCTCATTACTCAACTGCACGTTTATGCGATAAATGTTGTTGGTGTACTCCCACCAGAGCTATGGACATTAACTTCCCTCACCTATCTGAAGCTGGATCAAAATTTCTTGACAGGAACATTATCTGCATCTGTTGGCAATCTCACAGAATTGCGAACCTTGAGCCTGGGCATTGATGCATTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTTCTAAACTAGAAGTATTGGCATTCGGTTCCAACAATTTCTCTGGTCCCTTACCGTCAGAGCTTGGAAATCTTTCTATGTTAAGGGAGCTATACATTGATAGCTCTGGAGTTTCTGGTGGTATTCCTCCATCATTTTCAAGTCTGAGAAACTTGCAGACAGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAGTTGGACAAGGCTCACATCTCTGAGGTTTCAAGGAAACTCTTTTACAGGTCCTATACCATCGACGTTTTCAAACTTGACATCTCTGACTGAGTTGAGAATAGGTGATTTATCCAATGGAAGCTCTTCTCTGGCATTCATCAGTAATATGACATCTCTAACTATCCTGGTGTTGAGAAATAATAATATGACTGGTTCAATTCCATCCAACATTGGAGGATTCCGTAGACTTACCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAGTTTGAGTTCACTGTCACACTTGATTCTTGGAAATAACAAGTTAAATGGGACCCTACCTACACAGAAGATTGCATCACTTCTAAATATAGACTTGTCATATAACGATTTATCAGGGAGCTTTCCTGCTTGGATCAACGAGCAAAACTTACAACTAAATTTAGTCGCCAACAATTTCACAATTGACAGTGCTAGTATCAGTGGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGGTCGTCCAATATATTCTGATTTTGGGATCAAGTGTGGAGGTCCACAGATCAGAAGTTCATCAGGGATTTTGTTTGAAAGAGAAAATGAGACTCTCGGTCCTGCTACGTACTTTGTTACTGAGTCACAAAGGTGGGCCGTTAGTAATACTGGATACTTTACTGGGACCAACAATCCTCAATACACAGCCAATACGTTGTCTCAATTCCCAAACACCCTTGACACAGAACTTTTTCAGACACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAATGGCAACTACACTGTGAACCTTCATTTTGCAGAGATAGCTTTCCCAGATTCAAATACATGGCAAAGCCGTGGGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTGTTACAGAATTTTGATATTAGAAAGCAGGCAGGTGGGTCTTTCCTTGCTGTCAGAAAGAATTTTACGGCTGAAGTTACAGAGAACTTCCTGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTAAACAGGGTGATTTTGGACCCGCTGTTTCAGCCATCAGTGCTACCCCAGATTTTGTACCAACTGTCAGTAATGTTCCTCCAAGTACTAAGGAGAATAGAACGGGCCTAATCGTAGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGCGCAGTTTTCTTTGTTGTTCAGAGAAGGAAAAGGCGTCGCGCCTATGAAGATGAAGAGCTCCTAGGAATAGACACTAGACCGTACACTTTTAGTTTTTCTGAATTAAGGAGTGCTACAAATGACTTTAATTCATCCAACAAACTTGGCGAGGGCGGATTTGGACCTGTTTACAAGGGAACATTAAATGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAATTATATGGATGTTGCATTGAGGCTGATAAACGTCTCCTTGTTTATGAGTTTCTTGAAAACAAGAGTCTTGACCAAGCATTATTTGGACAAAAACATTTGATTATTGATTGGCCAACACGTTTTGAGATATGCGTGGGTGTAGCAAGGGGCCTCACTTACCTTCATGAGGAATCGAGACTTCGCATAGTGCACAGAGATGTTAAGGCCAGTAACATCCTGCTTGATGGTAATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTCTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGACCCAAGCTTAGAGCAAGACAAAGTATATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGAATTATCAGAGTTCAATAAGGAGGAAGTAAAAAGGGTGATCGGTGTAGCTCTTCTGTGTACTCAAACATCTCCAGCCCTTCGGCCATCGATGTCCCGCGTGGTGGCAATGCTGACTGGAGACATTGAAGTGGCCGCTGTAACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGATGACATTACAAGCTTTATAGATACTCCATCAACTGAAGAACCTGATACTGGCCGTTATGCATCGACAAGTTCGAGTATTGTTGATACACATCGCTCACCAGCCAATGCTTCTGAACCAATGCTTCGTGGATTATTAGGAGAGGGTAGGTGA 3228 43.56 MLGTWAGLAYGLLAVGVVVSAWALGRSQPHNRRNWQRAQRQTQEIIRGFIFVLCAIASIVTHLIVLSRAQNSTLPPTDPDQARALNSIFRQWRISAPSGAWNISGNLCSGRAVDTTTPIDSNGNLNPLIKCDCSANNGATCLITQLHVYAINVVGVLPPELWTLTSLTYLKLDQNFLTGTLSASVGNLTELRTLSLGIDALSGELPKELGSLSKLEVLAFGSNNFSGPLPSELGNLSMLRELYIDSSGVSGGIPPSFSSLRNLQTVWASDNEFTGRIPDFIGSWTRLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISNMTSLTILVLRNNNMTGSIPSNIGGFRRLTQLDLSFNNLTGEIPSSLFSLSSLSHLILGNNKLNGTLPTQKIASLLNIDLSYNDLSGSFPAWINEQNLQLNLVANNFTIDSASISGLPSGLNCLQRNFPCNRGRPIYSDFGIKCGGPQIRSSSGILFERENETLGPATYFVTESQRWAVSNTGYFTGTNNPQYTANTLSQFPNTLDTELFQTQRLSASSLRYYGLGLENGNYTVNLHFAEIAFPDSNTWQSRGRRLFDIYIQGNRVLQNFDIRKQAGGSFLAVRKNFTAEVTENFLEIHLFWAGKGTCCIPKQGDFGPAVSAISATPDFVPTVSNVPPSTKENRTGLIVGLVVGLGSVFFLIIGAVFFVVQRRKRRRAYEDEELLGIDTRPYTFSFSELRSATNDFNSSNKLGEGGFGPVYKGTLNDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGQKHLIIDWPTRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLEWAWYLHENNCELEMVDSELSEFNKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIEVAAVTSKPGYLTDWKFDDITSFIDTPSTEEPDTGRYASTSSSIVDTHRSPANASEPMLRGLLGEGR 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38806239 38819467 - CcPI632755_09g024640.1 Cco09g2464 188921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2464 1075 FunFam Os05g0263100 protein 82 321 - -
Cco09g2464 1075 SUPERFAMILY L domain-like 144 421 - -
Cco09g2464 1075 ProSiteProfiles Protein kinase domain profile. 736 1010 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2464 1075 Gene3D Transferase(Phosphotransferase) domain 1 812 1015 - -
Cco09g2464 1075 Pfam Malectin domain 471 653 IPR021720 -
Cco09g2464 1075 MobiDBLite consensus disorder prediction 1034 1058 - -
Cco09g2464 1075 CDD STKc_IRAK 742 1006 - -
Cco09g2464 1075 FunFam Putative LRR receptor-like serine/threonine-protein kinase 812 1016 - -
Cco09g2464 1075 FunFam Putative LRR receptor-like serine/threonine-protein kinase 322 445 - -
Cco09g2464 1075 Gene3D Ribonuclease Inhibitor 322 446 IPR032675 -
Cco09g2464 1075 MobiDBLite consensus disorder prediction 1034 1075 - -
Cco09g2464 1075 Gene3D Ribonuclease Inhibitor 100 321 IPR032675 -
Cco09g2464 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 856 868 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2464 1075 FunFam Leucine-rich repeat receptor-like protein kinase 467 657 - -
Cco09g2464 1075 SUPERFAMILY Protein kinase-like (PK-like) 719 1038 IPR011009 -
Cco09g2464 1075 Pfam Protein tyrosine and serine/threonine kinase 739 1003 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2464 1075 FunFam Leucine-rich repeat receptor-like protein kinase 705 811 - -
Cco09g2464 1075 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 61 1030 IPR051824 GO:0005886(PANTHER)
Cco09g2464 1075 Gene3D - 470 657 - -
Cco09g2464 1075 SMART serkin_6 736 1004 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2464 1075 Pfam Leucine Rich Repeat 334 355 IPR001611 GO:0005515(InterPro)
Cco09g2464 1075 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515(InterPro)
Cco09g2464 1075 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515(InterPro)
Cco09g2464 1075 Pfam Leucine Rich Repeat 358 380 IPR001611 GO:0005515(InterPro)
Cco09g2464 1075 Gene3D Phosphorylase Kinase; domain 1 697 811 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1585 Cco-Chr6:26425038 Cco09g2464 Cco-Chr9:38806239 6.90E-89 dispersed
Cco07g1105 Cco-Chr7:24612574 Cco09g2464 Cco-Chr9:38806239 2.10E-90 dispersed
Cco09g2464 Cco-Chr9:38806239 Cco11g1782 Cco-Chr11:30528443 1.70E-142 dispersed
Cco11g0070 Cco-Chr11:727981 Cco09g2464 Cco-Chr9:38806239 1.10E-22 dispersed
Cco09g2464 Cco-Chr9:38806239 Cco11g1783 Cco-Chr11:30552622 2.40E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87127 PF07714 PK_Tyr_Ser-Thr 6.00E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2464 - - - 0.0