Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2488 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTAATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAATAATAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCTCTCGTCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCATAACGACAGTTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCCCCTCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAATAATAATAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1149 48.74 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLVFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFG 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39010121 39012172 + CcPI632755_09g024880.1 Cco09g2488 188945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2488 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 189 IPR046955 GO:0003700(InterPro)
Cco09g2488 382 MobiDBLite consensus disorder prediction 313 332 - -
Cco09g2488 382 MobiDBLite consensus disorder prediction 333 352 - -
Cco09g2488 382 Gene3D - 31 89 - -
Cco09g2488 382 MobiDBLite consensus disorder prediction 313 382 - -
Cco09g2488 382 FunFam Myb family transcription factor 31 89 - -
Cco09g2488 382 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cco09g2488 382 MobiDBLite consensus disorder prediction 368 382 - -
Cco09g2488 382 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
Cco09g2488 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Cco09g2488 382 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Cco09g2488 382 Pfam MYB-CC type transfactor, LHEQLE motif 127 167 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0383 Cco-Chr5:3112556 Cco09g2488 Cco-Chr9:39010121 3.00E-39 dispersed
Cco07g0226 Cco-Chr7:2286328 Cco09g2488 Cco-Chr9:39010121 2.10E-30 dispersed
Cco09g2488 Cco-Chr9:39010121 Cco10g1314 Cco-Chr10:26074426 7.90E-34 dispersed
Cco11g0984 Cco-Chr11:16134236 Cco09g2488 Cco-Chr9:39010121 3.10E-30 transposed
Cco02g2008 Cco-Chr2:33035249 Cco09g2488 Cco-Chr9:39010121 1.30E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60027 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2488 - - - 0.0