Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g2488 | ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTAATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAATAATAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCTCTCGTCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCATAACGACAGTTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCCCCTCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAATAATAATAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA | 1149 | 48.74 | MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLVFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFG | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 39010121 | 39012172 | + | CcPI632755_09g024880.1 | Cco09g2488 | 188945 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g2488 | 382 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 189 | IPR046955 | GO:0003700(InterPro) | |
Cco09g2488 | 382 | MobiDBLite | consensus disorder prediction | 313 | 332 | - | - | |
Cco09g2488 | 382 | MobiDBLite | consensus disorder prediction | 333 | 352 | - | - | |
Cco09g2488 | 382 | Gene3D | - | 31 | 89 | - | - | |
Cco09g2488 | 382 | MobiDBLite | consensus disorder prediction | 313 | 382 | - | - | |
Cco09g2488 | 382 | FunFam | Myb family transcription factor | 31 | 89 | - | - | |
Cco09g2488 | 382 | SUPERFAMILY | Homeodomain-like | 31 | 87 | IPR009057 | - | |
Cco09g2488 | 382 | MobiDBLite | consensus disorder prediction | 368 | 382 | - | - | |
Cco09g2488 | 382 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 32 | 87 | IPR006447 | GO:0003677(InterPro) | |
Cco09g2488 | 382 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 29 | 89 | IPR017930 | - | |
Cco09g2488 | 382 | Pfam | Myb-like DNA-binding domain | 34 | 84 | IPR001005 | - | |
Cco09g2488 | 382 | Pfam | MYB-CC type transfactor, LHEQLE motif | 127 | 167 | IPR025756 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0383 | Cco-Chr5:3112556 | Cco09g2488 | Cco-Chr9:39010121 | 3.00E-39 | dispersed | |
Cco07g0226 | Cco-Chr7:2286328 | Cco09g2488 | Cco-Chr9:39010121 | 2.10E-30 | dispersed | |
Cco09g2488 | Cco-Chr9:39010121 | Cco10g1314 | Cco-Chr10:26074426 | 7.90E-34 | dispersed | |
Cco11g0984 | Cco-Chr11:16134236 | Cco09g2488 | Cco-Chr9:39010121 | 3.10E-30 | transposed | |
Cco02g2008 | Cco-Chr2:33035249 | Cco09g2488 | Cco-Chr9:39010121 | 1.30E-86 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60027 | PF00249 | Myb_DNA-binding | 2.10E-06 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g2488 | - | - | - | 0.0 |