Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0003 ATGCTTTCGGCTACTTCTCCACCGGATCTTGTGAAGATAGAGTGTTTGACTGTACCCTCCTCCCAATTCTCTAACTCAATCCTCTCCACCATCGATGTTGTACAACAGGCTATCGCCATTTTCTCTCCATTCACTAAATTACTCGGTGATTTACGCCTTTCCACCGCGGTTTCCGACTGTCTCGATTTGCTTGACTCTTCTGCTGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAAAATCCCAAGGCTAAAGACCACAGCACCGGAGATTTGAGTTCCGATCTGAAGACATGGCTGAGCGCTGCAGTGGTTAATCCAGAAACATGCATGGATGGATTTGAGGGCACCAATAGCATTATCAAAGGTCTAGTATCTGGAAGCATCAACCAGTTAACTTCACAGCTCTACGACCTTCTTTCCATGGTCAAATCAATCCCCAATCAGCCGGCGGCTGACTTTCCTTCCTGGGTGAAATCTGAGGACCGGAACCTGCTGCAACTAAATGACTTCGCCGCCGATGCCACTGTGGCCGCAGATGGGACTGGGGATTTCACCAGTGTGATGGATGCTGTATTAGCAGCCCCTGACAATAGCATACAACGTTATGTTATATACATAAAGAGGGGTGTGTATTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAATCTAATGATGATTGGAGATGGAATTGATGCCACCATCATATCGGGTAATCGGAGTTTTATTGACGGTTGGACAACATTCCGTTCAGCGACATTTGCTGTAAGTGGAAGAGGATTCATAGCTCGAGACATAACATTCGAGAATACTGCAGGGCCACAGAAACATCAAGCAGTAGCACTTAGATCGGACTCGGATCTGTCGGTATTTTTTAGATGCCGTATTAGAGGATATCAAGACACTCTGTACACGCACACCATGCGCCAATTCTACCGCGAGTGCCAAATCAGTGGCACCGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAATTGTAGCATCCTCGCGAAGAAAGGTCTTCCCAATCAGAAAAACACCATCACTGCTCAAGGCCGGAAAGACCCAAACCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCGGATTCAGATCTTAAACCTTCGGTTAACACCACAGCTACATACCTTGGAAGACCATGGAAAGAATATTCTAGAACCATTATCATGCAGTCATATATGAGCGACGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGCCGATTTTGCATTGAAGACACTATTCTACGCCGAGTTTATGAATTATGGACCAGGGGCGGGATTGGCGAAGCGTGTCAATTGGCCTGGTTACCGCCGGCTGAACCAAACTAGTGAAGCTTCTAACTTCACCGTGGCTCAATTCATTGAAGGAAACCTGTGGTTGCCGTCCACCGGTGTCAAATACACTGCAGGACTGGGAGCTAATTAA 1464 47.4 MLSATSPPDLVKIECLTVPSSQFSNSILSTIDVVQQAIAIFSPFTKLLGDLRLSTAVSDCLDLLDSSADQLSWSLSATQNPKAKDHSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIIKGLVSGSINQLTSQLYDLLSMVKSIPNQPAADFPSWVKSEDRNLLQLNDFAADATVAADGTGDFTSVMDAVLAAPDNSIQRYVIYIKRGVYFENVEIKKKKWNLMMIGDGIDATIISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLKPSVNTTATYLGRPWKEYSRTIIMQSYMSDAIRPEGWLEWNADFALKTLFYAEFMNYGPGAGLAKRVNWPGYRRLNQTSEASNFTVAQFIEGNLWLPSTGVKYTAGLGAN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 107308 109712 + CcPI632755_10g000030.1 Cco10g0003 188961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0003 487 SMART PMEI_2 6 145 IPR006501 GO:0004857(InterPro)
Cco10g0003 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 144 IPR035513 -
Cco10g0003 487 SUPERFAMILY Pectin lyase-like 171 483 IPR011050 -
Cco10g0003 487 Pfam Pectinesterase 173 470 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco10g0003 487 FunFam Pectinesterase 167 484 - -
Cco10g0003 487 Gene3D - 167 484 IPR012334 -
Cco10g0003 487 Pfam Plant invertase/pectin methylesterase inhibitor 36 140 IPR006501 GO:0004857(InterPro)
Cco10g0003 487 CDD PMEI-like_4 1 146 - -
Cco10g0003 487 PANTHER PECTINESTERASE 29 475 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco10g0003 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 17 148 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1800 Cco-Chr3:32640561 Cco10g0003 Cco-Chr10:107308 4.70E-133 dispersed
Cco09g0539 Cco-Chr9:4706801 Cco10g0003 Cco-Chr10:107308 4.30E-105 dispersed
Cco09g0540 Cco-Chr9:4731061 Cco10g0003 Cco-Chr10:107308 5.20E-127 dispersed
Cco10g0003 Cco-Chr10:107308 Cco11g0021 Cco-Chr11:278329 4.30E-101 dispersed
Cco10g0003 Cco-Chr10:107308 Cco01g0043 Cco-Chr1:307140 2.80E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0003 K01051 - csv:101207185 895.575