Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0007 ATGACCCAATATGGCACGCGGTATTATTTGCAAGCGTCCCTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGCCATTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCATGGTTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGAGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCTAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCAGTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAACCCCCAAAGACATGCACGACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGGAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAGGAGGTGCGTGTCCAATCTGATCCGGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTCGGAATGA 1809 44.72 MTQYGTRYYLQASLPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKAILGFLSGLHVRQITTKDRSSNSYFQTSYLFSRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHGSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQELDKPDAEPASDVKTGPDELPPRDLDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNQSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 155254 162833 + CcPI632755_10g000070.1 Cco10g0007 188965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0007 602 SUPERFAMILY HSP20-like chaperones 513 598 IPR008978 -
Cco10g0007 602 Gene3D - 308 406 IPR036431 GO:0003677(InterPro)
Cco10g0007 602 MobiDBLite consensus disorder prediction 406 423 - -
Cco10g0007 602 MobiDBLite consensus disorder prediction 11 47 - -
Cco10g0007 602 SMART bright_3 309 400 IPR001606 GO:0003677(InterPro)
Cco10g0007 602 SUPERFAMILY ARID-like 303 409 IPR036431 GO:0003677(InterPro)
Cco10g0007 602 MobiDBLite consensus disorder prediction 127 147 - -
Cco10g0007 602 MobiDBLite consensus disorder prediction 11 38 - -
Cco10g0007 602 Gene3D - 498 602 IPR008978 -
Cco10g0007 602 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 502 602 IPR002068 -
Cco10g0007 602 CDD ARID 313 395 - -
Cco10g0007 602 MobiDBLite consensus disorder prediction 406 429 - -
Cco10g0007 602 SMART ARID_2 305 395 - -
Cco10g0007 602 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 143 601 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
Cco10g0007 602 MobiDBLite consensus disorder prediction 182 203 - -
Cco10g0007 602 Pfam Hsp20/alpha crystallin family 519 601 IPR002068 -
Cco10g0007 602 ProSiteProfiles ARID domain profile. 308 399 IPR001606 GO:0003677(InterPro)
Cco10g0007 602 FunFam AT-rich interactive domain-containing protein 3 308 407 - -
Cco10g0007 602 MobiDBLite consensus disorder prediction 182 259 - -
Cco10g0007 602 CDD ACD_sHsps_p23-like 521 597 - -
Cco10g0007 602 FunFam AT-rich interactive domain-containing protein 3 494 602 - -
Cco10g0007 602 Pfam ARID/BRIGHT DNA binding domain 311 395 IPR001606 GO:0003677(InterPro)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60032 PF00011 HSP20 7.30E-06 CL0190 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0007 - - - 0.0