Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0007 ATGACCCAATATGGCACGCGGTATTATTTGCAAGCGTCCCTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGCCATTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCATGGTTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGAGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCTAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCAGTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAACCCCCAAAGACATGCACGACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGGAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAGGAGGTGCGTGTCCAATCTGATCCGGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTCGGAATGA 1809 44.72 MTQYGTRYYLQASLPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKAILGFLSGLHVRQITTKDRSSNSYFQTSYLFSRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHGSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQELDKPDAEPASDVKTGPDELPPRDLDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNQSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 155254 162833 + CcPI632755_10g000070.1 Cco10g0007 188965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0007 602 SUPERFAMILY HSP20-like chaperones 513 598 IPR008978 -
Cco10g0007 602 Gene3D - 308 406 IPR036431 GO:0003677(InterPro)
Cco10g0007 602 MobiDBLite consensus disorder prediction 406 423 - -
Cco10g0007 602 MobiDBLite consensus disorder prediction 11 47 - -
Cco10g0007 602 SMART bright_3 309 400 IPR001606 GO:0003677(InterPro)
Cco10g0007 602 SUPERFAMILY ARID-like 303 409 IPR036431 GO:0003677(InterPro)
Cco10g0007 602 MobiDBLite consensus disorder prediction 127 147 - -
Cco10g0007 602 MobiDBLite consensus disorder prediction 11 38 - -
Cco10g0007 602 Gene3D - 498 602 IPR008978 -
Cco10g0007 602 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 502 602 IPR002068 -
Cco10g0007 602 CDD ARID 313 395 - -
Cco10g0007 602 MobiDBLite consensus disorder prediction 406 429 - -
Cco10g0007 602 SMART ARID_2 305 395 - -
Cco10g0007 602 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 143 601 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
Cco10g0007 602 MobiDBLite consensus disorder prediction 182 203 - -
Cco10g0007 602 Pfam Hsp20/alpha crystallin family 519 601 IPR002068 -
Cco10g0007 602 ProSiteProfiles ARID domain profile. 308 399 IPR001606 GO:0003677(InterPro)
Cco10g0007 602 FunFam AT-rich interactive domain-containing protein 3 308 407 - -
Cco10g0007 602 MobiDBLite consensus disorder prediction 182 259 - -
Cco10g0007 602 CDD ACD_sHsps_p23-like 521 597 - -
Cco10g0007 602 FunFam AT-rich interactive domain-containing protein 3 494 602 - -
Cco10g0007 602 Pfam ARID/BRIGHT DNA binding domain 311 395 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0007 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g0804 . 119 470 ARID Transcription Factor Family AT1G04880 58.4 9.7e-108 387.5
Cco10g0007 . 300 570 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Cco05g1750 . 16 309 ARID Transcription Factor Family AT1G76110 68.1 1.9e-111 399.4
Cco10g0007 . 279 600 ARID Transcription Factor Family AT1G76510 60.2 1.0e-109 394.0
Cco07g1514 . 1 764 ARID Transcription Factor Family AT3G43240 59.1 1.5e-259 892.5
Cco09g0135 . 120 859 ARID Transcription Factor Family AT3G43240 59.2 6.1e-256 880.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60032 PF00011 HSP20 7.30E-06 CL0190 Cco TR