Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0007 | ATGACCCAATATGGCACGCGGTATTATTTGCAAGCGTCCCTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGCCATTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCATGGTTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGAGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCTAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCAGTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAACCCCCAAAGACATGCACGACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGGAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAGGAGGTGCGTGTCCAATCTGATCCGGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTCGGAATGA | 1809 | 44.72 | MTQYGTRYYLQASLPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKAILGFLSGLHVRQITTKDRSSNSYFQTSYLFSRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHGSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQELDKPDAEPASDVKTGPDELPPRDLDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNQSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE | 602 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 155254 | 162833 | + | CcPI632755_10g000070.1 | Cco10g0007 | 188965 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0007 | 602 | SUPERFAMILY | HSP20-like chaperones | 513 | 598 | IPR008978 | - | |
Cco10g0007 | 602 | Gene3D | - | 308 | 406 | IPR036431 | GO:0003677(InterPro) | |
Cco10g0007 | 602 | MobiDBLite | consensus disorder prediction | 406 | 423 | - | - | |
Cco10g0007 | 602 | MobiDBLite | consensus disorder prediction | 11 | 47 | - | - | |
Cco10g0007 | 602 | SMART | bright_3 | 309 | 400 | IPR001606 | GO:0003677(InterPro) | |
Cco10g0007 | 602 | SUPERFAMILY | ARID-like | 303 | 409 | IPR036431 | GO:0003677(InterPro) | |
Cco10g0007 | 602 | MobiDBLite | consensus disorder prediction | 127 | 147 | - | - | |
Cco10g0007 | 602 | MobiDBLite | consensus disorder prediction | 11 | 38 | - | - | |
Cco10g0007 | 602 | Gene3D | - | 498 | 602 | IPR008978 | - | |
Cco10g0007 | 602 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 502 | 602 | IPR002068 | - | |
Cco10g0007 | 602 | CDD | ARID | 313 | 395 | - | - | |
Cco10g0007 | 602 | MobiDBLite | consensus disorder prediction | 406 | 429 | - | - | |
Cco10g0007 | 602 | SMART | ARID_2 | 305 | 395 | - | - | |
Cco10g0007 | 602 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 143 | 601 | IPR045147 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro) | |
Cco10g0007 | 602 | MobiDBLite | consensus disorder prediction | 182 | 203 | - | - | |
Cco10g0007 | 602 | Pfam | Hsp20/alpha crystallin family | 519 | 601 | IPR002068 | - | |
Cco10g0007 | 602 | ProSiteProfiles | ARID domain profile. | 308 | 399 | IPR001606 | GO:0003677(InterPro) | |
Cco10g0007 | 602 | FunFam | AT-rich interactive domain-containing protein 3 | 308 | 407 | - | - | |
Cco10g0007 | 602 | MobiDBLite | consensus disorder prediction | 182 | 259 | - | - | |
Cco10g0007 | 602 | CDD | ACD_sHsps_p23-like | 521 | 597 | - | - | |
Cco10g0007 | 602 | FunFam | AT-rich interactive domain-containing protein 3 | 494 | 602 | - | - | |
Cco10g0007 | 602 | Pfam | ARID/BRIGHT DNA binding domain | 311 | 395 | IPR001606 | GO:0003677(InterPro) |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60032 | PF00011 | HSP20 | 7.30E-06 | CL0190 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0007 | - | - | - | 0.0 |