Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0008 ATGATGTCTCCTTTGGCCTTACCGAGAAATGGAGGCCCTGCTATTGCCATTGCCATTGCCATTGCCATTGCTAGGGCTTTGGTTCCTTGCTGGATCTCTCTTCATCCAACGGCGAAGAAGATAACAATGTCGTCGAACCATTCGGATTTGGAATCTTCAGCTTTTGATACTCAAACTTCGTCCAATCCGATTGCTCCCTTGGATCATCTTCCCTCCACCTCCTCCACCCTCTCTGAATCTGAAGAAAATCCCTGCACATCATCTTCGCCTTCCTCCACTCCACCTCCGATTCACCTACCTCTCTCTTGGCCTACCGATGCCACCCTTTCCCTCCACTGGATACACCATCTCATCGCCGCCTTCGACTGGTCTTCCAAAAATTTACCTCCATCCCAGTTTCCTTCCGTCCTTCCCGTCTCCGTTTTCGACACTCTAATCCTCACCGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCAGAATCCTCCAAGACTCAGCCGCCAGCAGCGACTCGACTGTAGTCGTCGTCGGAGACATCCACGGCCAATTTCATGATCTCCTCTTTCTTCTGCAGGATGCTGGTTTTCCTTCTGAAAACCGCTTCTTTGTCTTCAATGGGGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACTTTTTTGCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGAGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTGCTAACCAAGTACGGAGACAAGGGTAAGCATGTCTATCGGAAGTGTTTGGGGTGTTTCGAAGGGCTGCCTCTGGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGCATATCAGTTCCTTCGTCTAAAAGGTCGAAAGGGAAAAAAAATCGTAGGATAATCTTAAATCCCGAAGCCAACGGGTTATCTCTTGGTTCTTTGGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCGGGCGATGTGTTGTGGTCTGATCCCTCGATGAATCCTGGCCTCTCCCCAAATAAAGAGAGAGGCATAGGTCTCTTGTGGGGTCCTGATTGCACTGAAGAATTCTTGAAAAAATTCAATCTGAAGCTAATTATTAGATCCCATGAAGGTCCTGATGCTAGAGAAAAGAGACCCGGTCTTGCAGGAATGGATCAGGGTTACACGATAGATCATGTTGTAGATTCAGGGAAACTGATTACTTTGTTTAGTGCTCCAGACTATCCACAATTTCAGGCAACTGAGGAGAGATACAAAAACAAAGGTGCATATATTGTTCTAGAACCTCCGAATTTTGATGTTCCAATCATTCATAGTTTTGATGCCATTACTCCACGACCAAAGGTCAATGCCTATTACGATTTTGAGGATGTAATTGATTCTGACGAAGAATTAGACTTGGCTTCAATGGCAACTGATCCATGA 1512 46.3 MMSPLALPRNGGPAIAIAIAIAIARALVPCWISLHPTAKKITMSSNHSDLESSAFDTQTSSNPIAPLDHLPSTSSTLSESEENPCTSSSPSSTPPPIHLPLSWPTDATLSLHWIHHLIAAFDWSSKNLPPSQFPSVLPVSVFDTLILTASKILHKEPNCLRILQDSAASSDSTVVVVGDIHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSISVPSSKRSKGKKNRRIILNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNKERGIGLLWGPDCTEEFLKKFNLKLIIRSHEGPDAREKRPGLAGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATEERYKNKGAYIVLEPPNFDVPIIHSFDAITPRPKVNAYYDFEDVIDSDEELDLASMATDP 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 163483 175735 - CcPI632755_10g000080.1 Cco10g0008 188966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0008 503 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 71 495 IPR051134 -
Cco10g0008 503 MobiDBLite consensus disorder prediction 51 88 - -
Cco10g0008 503 MobiDBLite consensus disorder prediction 51 97 - -
Cco10g0008 503 CDD MPP_PP7 103 483 IPR041754 -
Cco10g0008 503 SUPERFAMILY Metallo-dependent phosphatases 133 475 IPR029052 -
Cco10g0008 503 Gene3D - 131 491 IPR029052 -
Cco10g0008 503 SMART pp2a_7 137 473 IPR006186 GO:0016787(InterPro)
Cco10g0008 503 FunFam Serine/threonine-protein phosphatase 121 497 - -
Cco10g0008 503 PRINTS Serine/threonine phosphatase family signature 273 299 IPR006186 GO:0016787(InterPro)
Cco10g0008 503 PRINTS Serine/threonine phosphatase family signature 203 230 IPR006186 GO:0016787(InterPro)
Cco10g0008 503 PRINTS Serine/threonine phosphatase family signature 333 360 IPR006186 GO:0016787(InterPro)
Cco10g0008 503 PRINTS Serine/threonine phosphatase family signature 236 260 IPR006186 GO:0016787(InterPro)
Cco10g0008 503 PRINTS Serine/threonine phosphatase family signature 173 200 IPR006186 GO:0016787(InterPro)
Cco10g0008 503 PRINTS Serine/threonine phosphatase family signature 427 443 IPR006186 GO:0016787(InterPro)
Cco10g0008 503 ProSitePatterns Serine/threonine specific protein phosphatases signature. 237 242 IPR006186 GO:0016787(InterPro)
Cco10g0008 503 Pfam Calcineurin-like phosphoesterase 173 399 IPR004843 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2196 Cco-Chr9:36285909 Cco10g0008 Cco-Chr10:163483 2.30E-114 dispersed
Cco10g0008 Cco-Chr10:163483 Cco11g1324 Cco-Chr11:26108292 3.10E-30 dispersed
Cco10g0008 Cco-Chr10:163483 Cco09g2425 Cco-Chr9:38491602 1.50E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0008 K04460 - csv:116402510 819.69