Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0011 | ATGACTCGCTATATCAGAGCTCTCGCCGCGAATACTTCGTCGGCGCCTCCGCCGGAGGCGGTGGCTTTGGAGTCGGACTTCGTGGTGATTCTGGCAGCGCTGCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGCCGTGGGGGTGGAAGTGTTGGAAATCAGGCATCGGCGAATAGAGGACTGAAGAAGAAGATCCTGCAGTCGCTTCCGAAATTCAGGTACAAGTCGACCGGGGGAGAGGGGAAAATTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCATGGAGGGGGAGGAGATCCGGCAGCTGCCACAGTGCGGGCATTGCTTCCACGTCAGCTGTGTAGACACGTGGCTGGGGTCCCACTCCTCATGTCCTTCTTGCCGTCAGATTCTGGTAGTGGCGAGATGCCAAAAGTGCGGGCAGTTTCCGGCCGTCGTGCAAGGCGGCGCTGCTCACAACAACGAAGAAGAGGAGGAAGTGGAAGATAACAACAGGGGTTTGGGATTTTTGCCTTGA | 546 | 58.24 | MTRYIRALAANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGSVGNQASANRGLKKKILQSLPKFRYKSTGGEGKIAAECAICLAEFMEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVQGGAAHNNEEEEEVEDNNRGLGFLP | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 196648 | 197193 | - | CcPI632755_10g000110.1 | Cco10g0011 | 188969 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0011 | 181 | SUPERFAMILY | RING/U-box | 76 | 144 | - | - | |
Cco10g0011 | 181 | CDD | RING-H2_EL5-like | 95 | 138 | - | - | |
Cco10g0011 | 181 | FunFam | E3 ubiquitin-protein ligase ATL6 | 59 | 144 | - | - | |
Cco10g0011 | 181 | MobiDBLite | consensus disorder prediction | 160 | 181 | - | - | |
Cco10g0011 | 181 | SMART | FANCL_C_2 | 92 | 146 | - | - | |
Cco10g0011 | 181 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 142 | IPR013083 | - | |
Cco10g0011 | 181 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 15 | 168 | IPR052788 | - | |
Cco10g0011 | 181 | SMART | ring_2 | 96 | 137 | IPR001841 | - | |
Cco10g0011 | 181 | Pfam | Ring finger domain | 95 | 138 | IPR001841 | - | |
Cco10g0011 | 181 | ProSiteProfiles | Zinc finger RING-type profile. | 96 | 138 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0011 | Cco-Chr10:196648 | Cco11g1944 | Cco-Chr11:32039827 | 1.30E-42 | dispersed | |
Cco10g0011 | Cco-Chr10:196648 | Cco02g0066 | Cco-Chr2:695765 | 1.60E-21 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0011 | - | - | - | 0.0 |