Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0011 ATGACTCGCTATATCAGAGCTCTCGCCGCGAATACTTCGTCGGCGCCTCCGCCGGAGGCGGTGGCTTTGGAGTCGGACTTCGTGGTGATTCTGGCAGCGCTGCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGCCGTGGGGGTGGAAGTGTTGGAAATCAGGCATCGGCGAATAGAGGACTGAAGAAGAAGATCCTGCAGTCGCTTCCGAAATTCAGGTACAAGTCGACCGGGGGAGAGGGGAAAATTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCATGGAGGGGGAGGAGATCCGGCAGCTGCCACAGTGCGGGCATTGCTTCCACGTCAGCTGTGTAGACACGTGGCTGGGGTCCCACTCCTCATGTCCTTCTTGCCGTCAGATTCTGGTAGTGGCGAGATGCCAAAAGTGCGGGCAGTTTCCGGCCGTCGTGCAAGGCGGCGCTGCTCACAACAACGAAGAAGAGGAGGAAGTGGAAGATAACAACAGGGGTTTGGGATTTTTGCCTTGA 546 58.24 MTRYIRALAANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGSVGNQASANRGLKKKILQSLPKFRYKSTGGEGKIAAECAICLAEFMEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVQGGAAHNNEEEEEVEDNNRGLGFLP 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 196648 197193 - CcPI632755_10g000110.1 Cco10g0011 188969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0011 181 SUPERFAMILY RING/U-box 76 144 - -
Cco10g0011 181 CDD RING-H2_EL5-like 95 138 - -
Cco10g0011 181 FunFam E3 ubiquitin-protein ligase ATL6 59 144 - -
Cco10g0011 181 MobiDBLite consensus disorder prediction 160 181 - -
Cco10g0011 181 SMART FANCL_C_2 92 146 - -
Cco10g0011 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 142 IPR013083 -
Cco10g0011 181 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 168 IPR052788 -
Cco10g0011 181 SMART ring_2 96 137 IPR001841 -
Cco10g0011 181 Pfam Ring finger domain 95 138 IPR001841 -
Cco10g0011 181 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0011 Cco-Chr10:196648 Cco11g1944 Cco-Chr11:32039827 1.30E-42 dispersed
Cco10g0011 Cco-Chr10:196648 Cco02g0066 Cco-Chr2:695765 1.60E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0011 - - - 0.0