Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0030 | ATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCACCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAAAGTACAGCCCCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGCGAATGAGCAGCTGGCAGGAAAGATTGAAACCCCAGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGA | 840 | 47.02 | MMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPTKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAANEQLAGKIETPENYSLYQQAEGYSMTERP | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 383913 | 386051 | + | CcPI632755_10g000300.1 | Cco10g0030 | 188988 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0030 | 279 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cco10g0030 | 279 | SUPERFAMILY | Homeodomain-like | 96 | 164 | IPR009057 | - | |
Cco10g0030 | 279 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 27 | 276 | IPR044559 | GO:0003700(InterPro) | |
Cco10g0030 | 279 | SMART | HOX_1 | 98 | 165 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0030 | 279 | Pfam | Homeodomain | 100 | 160 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0030 | 279 | Gene3D | - | 102 | 166 | - | - | |
Cco10g0030 | 279 | CDD | homeodomain | 100 | 162 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0030 | 279 | MobiDBLite | consensus disorder prediction | 158 | 201 | - | - | |
Cco10g0030 | 279 | ProSiteProfiles | 'Homeobox' domain profile. | 96 | 161 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0030 | 279 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0030 | Cco-Chr10:383913 | Cco11g1932 | Cco-Chr11:31974573 | 4.80E-73 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60035 | PF00046 | Homeodomain | 1.40E-18 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0030 | - | - | - | 0.0 |