Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0030 ATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCACCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAAAGTACAGCCCCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGCGAATGAGCAGCTGGCAGGAAAGATTGAAACCCCAGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGA 840 47.02 MMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPTKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAANEQLAGKIETPENYSLYQQAEGYSMTERP 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 383913 386051 + CcPI632755_10g000300.1 Cco10g0030 188988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0030 279 MobiDBLite consensus disorder prediction 1 26 - -
Cco10g0030 279 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Cco10g0030 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 27 276 IPR044559 GO:0003700(InterPro)
Cco10g0030 279 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Cco10g0030 279 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Cco10g0030 279 Gene3D - 102 166 - -
Cco10g0030 279 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Cco10g0030 279 MobiDBLite consensus disorder prediction 158 201 - -
Cco10g0030 279 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Cco10g0030 279 MobiDBLite consensus disorder prediction 175 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0030 Cco-Chr10:383913 Cco11g1932 Cco-Chr11:31974573 4.80E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60035 PF00046 Homeodomain 1.40E-18 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0030 - - - 0.0