Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0030 ATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCACCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAAAGTACAGCCCCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGCGAATGAGCAGCTGGCAGGAAAGATTGAAACCCCAGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGA 840 47.02 MMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPTKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAANEQLAGKIETPENYSLYQQAEGYSMTERP 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 383913 386051 + CcPI632755_10g000300.1 Cco10g0030 188988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0030 279 MobiDBLite consensus disorder prediction 1 26 - -
Cco10g0030 279 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Cco10g0030 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 27 276 IPR044559 GO:0003700(InterPro)
Cco10g0030 279 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Cco10g0030 279 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Cco10g0030 279 Gene3D - 102 166 - -
Cco10g0030 279 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Cco10g0030 279 MobiDBLite consensus disorder prediction 158 201 - -
Cco10g0030 279 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Cco10g0030 279 MobiDBLite consensus disorder prediction 175 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0030 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0030 Cco-Chr10:383913 Cco11g1932 Cco-Chr11:31974573 4.80E-73 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g1654 . 1 195 Wox Gene Family AT3G18010 57.2 3.0e-48 189.5
Cco06g1628 . 1 176 Wox Gene Family AT3G18010 53.6 6.1e-41 165.2
Cco10g0030 . 1 276 Wox Gene Family AT4G35550 51.2 8.7e-72 267.3
Cco11g1932 . 1 271 Wox Gene Family AT4G35550 50.9 1.2e-57 220.3
Cco08g1796 . 5 162 Wox Gene Family AT1G46480 65.1 2.4e-52 202.2
Cco01g1654 . 1 195 Wox Gene Family AT3G18010 57.2 3.0e-48 189.5
Cco06g1628 . 1 176 Wox Gene Family AT3G18010 53.6 6.1e-41 165.2
Cco08g1796 . 5 162 Wox Gene Family AT1G46480 65.1 2.4e-52 202.2
Cco10g0030 . 1 276 Wox Gene Family AT4G35550 51.2 8.7e-72 267.3
Cco11g1932 . 1 271 Wox Gene Family AT4G35550 50.9 1.2e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60035 PF00046 Homeodomain 1.40E-18 CL0123 Cco TF