Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0042 | ATGCCGATTGAGGATGATGTTGAGAGCTGCGGTAGCAGAGCCGCCGACTCCTCCTCGTCCCATGTGAACCCGAGGCATCATCGCCAGAAGCTTGAAGTCTACAACGAAGTGCTCCGACGAATCCAGCAATCCAATTTCCATGAGGCCAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTTAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCAGAAGATGTCCTCACGCATAAGAGATTACTTCAATTGGCTCTGGACCCTGCTAACCGACCTGTATTTGAAATCCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGGGGAACCATCCACCTCCAACCTTTGGCTCTTCACCTAATCTTGAAGCCCTTCCATTTCAGGGCAGCAAGTACGGTGTTGAAGATAGGGACAGTGCCCCAAATGTGACACCCTGTTTCTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCCCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTATGAGGAAACTGAGGAGCTGAAAAGGGTATTAGAAAAAGAAATTTTAAATTTTAAGGAGCAGTGTTGGTCAGAAAAGCAGCCCTGTCCTGCTTTGGGTAAGGATAACCAGAATAGAGTTGAATCTTTCCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCCGGGTCATTTGGGGACCTGTATCGGGGCACATATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGAAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTCTGCATCGTGACAGAGTTTATGTCGAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTCCATCTTTACTTAAAGTAGCCATTAATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGACCATAAGGCAGACGTTTTCAGCTTTGGAATAGCCTTATGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCACTACAAGCAGCGGTTGGCGTGGTCCAGAAGAGACAGCGGCCTACGATACCAAAGAATGTCCATCCCGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCATGATCCAACCAAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATAGCTGAGCAGGTTGAAAACAACGGGGAAAATCAACGCAAGAAGGACAAATTATCTGGTGCGTTCTTCTCAGCCTTCAAGAGGGGACACCACTGA | 1740 | 43.62 | MPIEDDVESCGSRAADSSSSHVNPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLALDPANRPVFEIRSVQVYPSANENFINSSCLDSSMMEDAQSSLNYSNRQGNHPPPTFGSSPNLEALPFQGSKYGVEDRDSAPNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRVLEKEILNFKEQCWSEKQPCPALGKDNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAINISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRQRPTIPKNVHPVLAELLERCWRHDPTKRPNFSEILEILKQIAEQVENNGENQRKKDKLSGAFFSAFKRGHH | 579 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 473834 | 480759 | - | CcPI632755_10g000420.1 | Cco10g0042 | 189000 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0042 | 579 | Coils | Coil | 543 | 563 | - | - | |
Cco10g0042 | 579 | CDD | ACT_TyrKc | 182 | 249 | - | - | |
Cco10g0042 | 579 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 414 | 426 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g0042 | 579 | Gene3D | Phosphorylase Kinase; domain 1 | 287 | 375 | - | - | |
Cco10g0042 | 579 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 134 | 550 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cco10g0042 | 579 | SMART | serkin_6 | 297 | 549 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g0042 | 579 | Pfam | Protein tyrosine and serine/threonine kinase | 297 | 546 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g0042 | 579 | SUPERFAMILY | Protein kinase-like (PK-like) | 275 | 546 | IPR011009 | - | |
Cco10g0042 | 579 | Coils | Coil | 234 | 254 | - | - | |
Cco10g0042 | 579 | Gene3D | Transferase(Phosphotransferase) domain 1 | 376 | 573 | - | - | |
Cco10g0042 | 579 | PRINTS | Tyrosine kinase catalytic domain signature | 454 | 464 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g0042 | 579 | PRINTS | Tyrosine kinase catalytic domain signature | 371 | 384 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g0042 | 579 | PRINTS | Tyrosine kinase catalytic domain signature | 408 | 426 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g0042 | 579 | PRINTS | Tyrosine kinase catalytic domain signature | 473 | 495 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g0042 | 579 | PRINTS | Tyrosine kinase catalytic domain signature | 517 | 539 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g0042 | 579 | CDD | STKc_MAP3K-like | 303 | 546 | - | - | |
Cco10g0042 | 579 | SUPERFAMILY | ACT-like | 182 | 247 | IPR045865 | - | |
Cco10g0042 | 579 | ProSitePatterns | Protein kinases ATP-binding region signature. | 303 | 324 | IPR017441 | GO:0005524(InterPro) | |
Cco10g0042 | 579 | FunFam | Serine/threonine-protein kinase isoform 1 | 287 | 375 | - | - | |
Cco10g0042 | 579 | ProSiteProfiles | ACT domain profile. | 184 | 264 | IPR002912 | - | |
Cco10g0042 | 579 | MobiDBLite | consensus disorder prediction | 134 | 153 | - | - | |
Cco10g0042 | 579 | ProSiteProfiles | Protein kinase domain profile. | 297 | 549 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g0042 | 579 | FunFam | serine/threonine-protein kinase HT1 | 376 | 567 | - | - | |
Cco10g0042 | 579 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0421 | Cco-Chr2:3792907 | Cco10g0042 | Cco-Chr10:473834 | 5.00E-226 | dispersed | |
Cco02g2070 | Cco-Chr2:33613878 | Cco10g0042 | Cco-Chr10:473834 | 3.80E-40 | dispersed | |
Cco05g1761 | Cco-Chr5:26025966 | Cco10g0042 | Cco-Chr10:473834 | 1.80E-181 | dispersed | |
Cco05g1791 | Cco-Chr5:26608999 | Cco10g0042 | Cco-Chr10:473834 | 1.10E-45 | dispersed | |
Cco08g0823 | Cco-Chr8:20075576 | Cco10g0042 | Cco-Chr10:473834 | 9.80E-137 | dispersed | |
Cco10g0042 | Cco-Chr10:473834 | Cco11g1147 | Cco-Chr11:22402226 | 2.70E-70 | dispersed | |
Cco10g0042 | Cco-Chr10:473834 | Cco04g1941 | Cco-Chr4:33738205 | 2.30E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87129 | PF07714 | PK_Tyr_Ser-Thr | 2.40E-75 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0042 | - | - | - | 0.0 |