Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0042 ATGCCGATTGAGGATGATGTTGAGAGCTGCGGTAGCAGAGCCGCCGACTCCTCCTCGTCCCATGTGAACCCGAGGCATCATCGCCAGAAGCTTGAAGTCTACAACGAAGTGCTCCGACGAATCCAGCAATCCAATTTCCATGAGGCCAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTTAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCAGAAGATGTCCTCACGCATAAGAGATTACTTCAATTGGCTCTGGACCCTGCTAACCGACCTGTATTTGAAATCCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGGGGAACCATCCACCTCCAACCTTTGGCTCTTCACCTAATCTTGAAGCCCTTCCATTTCAGGGCAGCAAGTACGGTGTTGAAGATAGGGACAGTGCCCCAAATGTGACACCCTGTTTCTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCCCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTATGAGGAAACTGAGGAGCTGAAAAGGGTATTAGAAAAAGAAATTTTAAATTTTAAGGAGCAGTGTTGGTCAGAAAAGCAGCCCTGTCCTGCTTTGGGTAAGGATAACCAGAATAGAGTTGAATCTTTCCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCCGGGTCATTTGGGGACCTGTATCGGGGCACATATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGAAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTCTGCATCGTGACAGAGTTTATGTCGAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTCCATCTTTACTTAAAGTAGCCATTAATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGACCATAAGGCAGACGTTTTCAGCTTTGGAATAGCCTTATGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCACTACAAGCAGCGGTTGGCGTGGTCCAGAAGAGACAGCGGCCTACGATACCAAAGAATGTCCATCCCGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCATGATCCAACCAAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATAGCTGAGCAGGTTGAAAACAACGGGGAAAATCAACGCAAGAAGGACAAATTATCTGGTGCGTTCTTCTCAGCCTTCAAGAGGGGACACCACTGA 1740 43.62 MPIEDDVESCGSRAADSSSSHVNPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLALDPANRPVFEIRSVQVYPSANENFINSSCLDSSMMEDAQSSLNYSNRQGNHPPPTFGSSPNLEALPFQGSKYGVEDRDSAPNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRVLEKEILNFKEQCWSEKQPCPALGKDNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAINISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRQRPTIPKNVHPVLAELLERCWRHDPTKRPNFSEILEILKQIAEQVENNGENQRKKDKLSGAFFSAFKRGHH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 473834 480759 - CcPI632755_10g000420.1 Cco10g0042 189000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0042 579 Coils Coil 543 563 - -
Cco10g0042 579 CDD ACT_TyrKc 182 249 - -
Cco10g0042 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0042 579 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Cco10g0042 579 PANTHER SERINE-THREONINE PROTEIN KINASE 134 550 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco10g0042 579 SMART serkin_6 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0042 579 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0042 579 SUPERFAMILY Protein kinase-like (PK-like) 275 546 IPR011009 -
Cco10g0042 579 Coils Coil 234 254 - -
Cco10g0042 579 Gene3D Transferase(Phosphotransferase) domain 1 376 573 - -
Cco10g0042 579 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0042 579 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0042 579 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0042 579 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0042 579 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0042 579 CDD STKc_MAP3K-like 303 546 - -
Cco10g0042 579 SUPERFAMILY ACT-like 182 247 IPR045865 -
Cco10g0042 579 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524(InterPro)
Cco10g0042 579 FunFam Serine/threonine-protein kinase isoform 1 287 375 - -
Cco10g0042 579 ProSiteProfiles ACT domain profile. 184 264 IPR002912 -
Cco10g0042 579 MobiDBLite consensus disorder prediction 134 153 - -
Cco10g0042 579 ProSiteProfiles Protein kinase domain profile. 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0042 579 FunFam serine/threonine-protein kinase HT1 376 567 - -
Cco10g0042 579 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0421 Cco-Chr2:3792907 Cco10g0042 Cco-Chr10:473834 5.00E-226 dispersed
Cco02g2070 Cco-Chr2:33613878 Cco10g0042 Cco-Chr10:473834 3.80E-40 dispersed
Cco05g1761 Cco-Chr5:26025966 Cco10g0042 Cco-Chr10:473834 1.80E-181 dispersed
Cco05g1791 Cco-Chr5:26608999 Cco10g0042 Cco-Chr10:473834 1.10E-45 dispersed
Cco08g0823 Cco-Chr8:20075576 Cco10g0042 Cco-Chr10:473834 9.80E-137 dispersed
Cco10g0042 Cco-Chr10:473834 Cco11g1147 Cco-Chr11:22402226 2.70E-70 dispersed
Cco10g0042 Cco-Chr10:473834 Cco04g1941 Cco-Chr4:33738205 2.30E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87129 PF07714 PK_Tyr_Ser-Thr 2.40E-75 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0042 - - - 0.0