Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0048 ATGGATTTCATAGCCAACCCATTTCGCTTTTCTTCATCTTCATCGCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCTCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGCTGTCTCCTTTATCTGATTGATGTCATTGCTAGCCTCCTCAGTGGACGTCTAGTTCGAGAACGCATCGGTCCGGCGATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTTCAGAGACAAACTTTGATGACATCCCGAACATCTTTGACACCAGCAGTGTGAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGTGAGAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTGCCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTCTATGCAGAAGGGATCTGTAA 708 45.2 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGASETNFDDIPNIFDTSSVKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 522405 523705 + CcPI632755_10g000480.1 Cco10g0048 189006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0048 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Cco10g0048 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Cco10g0048 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Cco10g0048 235 CDD RING-H2_NIPL1-like 189 232 - -
Cco10g0048 235 SMART ring_2 190 231 IPR001841 -
Cco10g0048 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Cco10g0048 235 Pfam Ring finger domain 190 232 IPR001841 -
Cco10g0048 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Cco10g0048 235 SUPERFAMILY RING/U-box 176 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0048 Cco-Chr10:522405 Cco11g1306 Cco-Chr11:25687463 3.00E-12 dispersed
Cco10g0048 Cco-Chr10:522405 Cco09g2195 Cco-Chr9:36276998 2.50E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0048 - - - 0.0