Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0049 ATGCTATCAAGCTTGATGAACTTCCTGAGGGCTTGCTGGCAGCCATGTGCCGATCATCTCTTGCGTCGTCGGGGTGGTGGTTCCGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCATCACATCAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGTCAGCTTGAGTCTGGTCCCTTGAGCTTGCTCGAGTCTGGACCCTATGGAACCTTTATAGGAATATACGATGGCCATGGCGGCCCTGAGACATCGCGATTCATATGTGATAACTTGTTCCAGCATCTCAAAGTGTTCGCCACAGAAGAAAAGGAAATGTCAGTTAATGTGATAAAAAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCACCAAGCAATGGCCTATGAACCCCCAGATTGCGGCTGTTGGTTCTTGCTGTCTGGTTGCTGTGATTTGTAATGGAAAACTCTACATTGCCAATCTTGGTGATTCCCGAGCTGTGTTGGGAAGGTTAGTTCGGTCCACGGGGGAAGTTCTTCCCATTCAGCTGTCATCGGAGCATAATGTAAGCATAGAGTCAGTCCGCCAGGAGATGCAGTCTTTGCACCCAGATGACTCCCACATAGTAGTGCTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCAATCGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGTAGGCCTATTTTGAGCTCAGAACCAGCAGTCTCTGTGCACGATCTAGATCCAAATGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCTGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATATTCGGATTTGAAGAAGATTGACCGTGGAGTTCGGCGCCATTTTCACGACGACACAACGGTGATAGTCGTGTTTCTTGGATCGAGCAGAGGGAGCAGCCCTGCTACAGCAGGGGGAGGGAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAATGAACCTATCTGCAAAATCTCTAGCACCTTGA 1179 48.35 MLSSLMNFLRACWQPCADHLLRRRGGGSDSVGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFIGIYDGHGGPETSRFICDNLFQHLKVFATEEKEMSVNVIKKAFQATEEGFLSLVTKQWPMNPQIAAVGSCCLVAVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIESVRQEMQSLHPDDSHIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAVSVHDLDPNDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSRGSSPATAGGGSPVLSVRGGGMNLSAKSLAP 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 526326 528959 - CcPI632755_10g000490.1 Cco10g0049 189007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0049 392 SUPERFAMILY PP2C-like 62 359 IPR036457 -
Cco10g0049 392 PANTHER PROTEIN PHOSPHATASE 43 357 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco10g0049 392 Gene3D - 40 363 IPR036457 -
Cco10g0049 392 FunFam Phosphatase 2C family protein 39 368 - -
Cco10g0049 392 CDD PP2Cc 82 358 IPR001932 -
Cco10g0049 392 ProSiteProfiles PPM-type phosphatase domain profile. 50 358 IPR001932 -
Cco10g0049 392 SMART PP2C_4 42 356 IPR001932 -
Cco10g0049 392 Pfam Protein phosphatase 2C 83 327 IPR001932 -
Cco10g0049 392 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0451 Cco-Chr6:4974892 Cco10g0049 Cco-Chr10:526326 2.00E-117 dispersed
Cco10g0049 Cco-Chr10:526326 Cco10g2062 Cco-Chr10:34000408 2.10E-138 dispersed
Cco10g0049 Cco-Chr10:526326 Cco04g1830 Cco-Chr4:33120802 2.40E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0049 K01102 - csv:101220137 731.095