Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0065 ATGGCAGAAGAGGATACCCCATCTGAAAGTTCTGAACCTTCTTCTTCTTCTTCAGCTCTCACCTCTTCAATGTCCACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTTTGAGAAGAAACACAGCCCCTCGTAGCAGAAGAATCTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGTCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACGATACTCACATGGCATTTCACGAAGAGCTACACAGCACAGTCTCTAGACAGCTTAGCATATGGTCTTCGTCATGAACTGCTGCAGCGCCCGATTTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGGTTTGTCCAGGCATTTCATCGAGATCATAGAAGCAACAATACATTTTATATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCATATAATATCAATCGGCTTTCTTCGGGTGAAGGGTGGTCGGAGCCACCCATACATGGCAATGTTTCTGCAAAATGGTTCCAGGAACCGCTTGATCCTATTAGCGGTGAGAAGATCGGGAAAGCAAGGCAAATCCCACCTGAGGACTTGATTAATATTGCTGGCATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCAGCTCTACCTGTTTCCGATGCTTCAAATGAAAGCATCGTTGCAGTGGTGGGTGTTACGACCGCCCTTTATAGCGTAGGTCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAAGCGGTCCAAAGCTTATGATGGCTGCCGATTCCCAGGATGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATAAGCAATATTACATTGACTCATTTTTCCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACACCAATGGCTGCAGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTTCAACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATACTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACAACATGCCAAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAACTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACATCAAATACTCTTAAAGAAACGGGAAAGTTCTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGCCTTAAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGCTGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACCCGAACGCATGGTGGCACGGGTCTTGGACTATGCATTGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACACCTGCAGACTCCACAGATCATCACTGTCAGTTTGATTTTGCAAAACATAATGCGGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGTTCACTTTAGAGGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAAAAGTTCTGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATTGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCTTGGATGTTAAACCATGATACATCCAACGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCACTGTACAGATCAAAGATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGTTGCAAAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGAAATCCTAACTCTCAGTGTGCGACATTTGAAGTCAGAGACAGCCAAGAAGAAACGACACCGAAACCATGTCAGTCACCATTTCTGCCCATTAACAATAGTTTAGTCGAGTTAACTCATGTACATTCGATTGAGAGTAATGTGAGGACGGGCGATCAGTGTGACACGAGACAAAATTCATCAATGCCTCAATGTCAAAGTTCTGAGTCCAATGGACAGAACTTAGGATGCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAAGAACGTTCAAGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAGAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCTACGGTCATTGCTTTCGGAGATGGAATGCAGGCTGTTGAAGCTCTGACTGCCATGGTCAGTGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGCAGGAACGAGCCTTCACGTTCCAATTGTAGCATTGACAGCCCACGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCCTACCTAACAAAGCCAATTGACTATAAGCTGATGTTTTGCAAATGGAAACGAAGTCAGTTTCTAACTAAACGACAGGAAAAGAGAAGGCCTTTAAGGGTCCGAACCAGTGTGTGTATTCAAGAGATGGGTTTAGTGCTGAAGAGTGTGCCAATTTGGATAAGGAATTTGCACAAAATAATGCAAATTCTATGTTTGATGGCAGCACCAGATAGAGATGGTTAG 3822 42.05 MAEEDTPSESSEPSSSSSALTSSMSTPLRKVFCRISGLATSLRRNTAPRSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYNINRLSSGEGWSEPPIHGNVSAKWFQEPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLMMAADSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDKQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDNMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKETGKFCMDQKKSRFPNRTKMKQQGDHTKNALKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPADSTDHHCQFDFAKHNAVVLLALRGSMSRLITSQWLRKIGLFTLEASEWNELTLILQELFQAKSSENKKGFSPQDSLGETLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNPNSQCATFEVRDSQEETTPKPCQSPFLPINNSLVELTHVHSIESNVRTGDQCDTRQNSSMPQCQSSESNGQNLGCNYPKSQGESHSKNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIAFGDGMQAVEALTAMVSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEAGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMFCKWKRSQFLTKRQEKRRPLRVRTSVCIQEMGLVLKSVPIWIRNLHKIMQILCLMAAPDRDG 1273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 647061 652844 - CcPI632755_10g000650.1 Cco10g0065 189023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0065 1273 Gene3D - 574 773 IPR036890 -
Cco10g0065 1273 MobiDBLite consensus disorder prediction 1037 1078 - -
Cco10g0065 1273 Gene3D - 494 573 - -
Cco10g0065 1273 MobiDBLite consensus disorder prediction 7 23 - -
Cco10g0065 1273 SMART HKATPase_4 619 771 IPR003594 -
Cco10g0065 1273 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 768 IPR003594 -
Cco10g0065 1273 CDD REC_hyHK_CKI1_RcsC-like 1090 1212 - -
Cco10g0065 1273 Gene3D - 1066 1226 - -
Cco10g0065 1273 PANTHER TWO-COMPONENT HISTIDINE KINASE 52 777 IPR050736 -
Cco10g0065 1273 Pfam Response regulator receiver domain 1090 1209 IPR001789 GO:0000160(InterPro)
Cco10g0065 1273 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco10g0065 1273 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco10g0065 1273 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco10g0065 1273 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco10g0065 1273 SMART HisKA_10 506 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco10g0065 1273 FunFam Histidine kinase 1-like protein 494 573 - -
Cco10g0065 1273 SUPERFAMILY CheY-like 1086 1265 IPR011006 -
Cco10g0065 1273 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 768 IPR036890 -
Cco10g0065 1273 SMART REC_2 1088 1215 IPR001789 GO:0000160(InterPro)
Cco10g0065 1273 MobiDBLite consensus disorder prediction 1037 1079 - -
Cco10g0065 1273 ProSiteProfiles Response regulatory domain profile. 1089 1219 IPR001789 GO:0000160(InterPro)
Cco10g0065 1273 MobiDBLite consensus disorder prediction 1 23 - -
Cco10g0065 1273 CDD HisKA 507 568 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco10g0065 1273 ProSiteProfiles Histidine kinase domain profile. 513 771 IPR005467 -
Cco10g0065 1273 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0290 Cco-Chr2:2629916 Cco10g0065 Cco-Chr10:647061 1.60E-40 dispersed
Cco02g1620 Cco-Chr2:28825783 Cco10g0065 Cco-Chr10:647061 1.20E-69 dispersed
Cco10g0065 Cco-Chr10:647061 Cco11g0125 Cco-Chr11:1321306 6.90E-42 dispersed
Cco11g1025 Cco-Chr11:19012665 Cco10g0065 Cco-Chr10:647061 1.40E-06 dispersed
Cco10g0065 Cco-Chr10:647061 Cco02g1037 Cco-Chr2:13603027 1.90E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60037 PF02518 HATPase_c 6.30E-23 CL0025 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0065 - - - 0.0