Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0076 ATGGCTTCCATTTCTACTTCTCTTCTTTCTCTCTTCCTCTTCTTCCCTTTCTTTTCAGGTGTAAATTCAGCAACTTTCACCATTTTAAATCAGTGTGGTTACACAGTGTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACTACCGGCTTCGTCCTGCAGACAGGACAGTCCAACGTCCTCACCATGCCCCCGGCATGGTCCGGCCGTATTTGGGGCCGCACTTATTGCTCCCAAGATGCCGCCGGCAGATTCTCCTGCGCCACTGCCGACTGCGGCTCGGGCGTCGTCGAATGCAATGGTGCTGGTGCTACCCCCCCCGCCACCCTTGCCGAGTTCACTCTCAATGGCGCCGGTGGGCTCGATTTCTTCGATGTCAGCCTTGTTGATGGATACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGAGGAAATTGCACGACCATTGGGTGTGCGACAGATTTAAATAGCGAGTGTCCACCGGAGCTAAGAGTGGTGGCAAGTGACGCCGGTGGGCGAAGCATAGCGTGTAAGAGCGCATGTGGCGCATTTGGTGACGCACAATATTGTTGTAGTGGCGAATATGGAAATCCAAACACTTGTAGACCGTCATCTTACTCACAGTTCTTCAAGTCCGCATGTCCTCAAGCTTATAGTTATGCGTACGATGACGGTACCAGTACATTCACTTGCACTTCTGCCAATTACCTCATCACTTTCTGTCCTTCTCTTTCAACTAGTGTGAAATCATCAAACGGGCAGTATCCCCGGGCAGTGGACATCTCAAGAGCCGAGCATTCGGGCAGACCGTTGACGTCAGTAGCCGTTATCTCCACCGTGACGGCAGCTCTAAGTCGGCGATTTTTGAGTCTCTTTTAA 897 52.29 MASISTSLLSLFLFFPFFSGVNSATFTILNQCGYTVWPGVLSGAGTSQLSTTGFVLQTGQSNVLTMPPAWSGRIWGRTYCSQDAAGRFSCATADCGSGVVECNGAGATPPATLAEFTLNGAGGLDFFDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPPELRVVASDAGGRSIACKSACGAFGDAQYCCSGEYGNPNTCRPSSYSQFFKSACPQAYSYAYDDGTSTFTCTSANYLITFCPSLSTSVKSSNGQYPRAVDISRAEHSGRPLTSVAVISTVTAALSRRFLSLF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 712712 715379 - CcPI632755_10g000760.1 Cco10g0076 189034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0076 298 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Cco10g0076 298 SMART tha2 26 248 IPR001938 -
Cco10g0076 298 SUPERFAMILY Osmotin, thaumatin-like protein 24 249 IPR037176 -
Cco10g0076 298 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Cco10g0076 298 PANTHER OS03G0233200 PROTEIN 12 248 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cco10g0076 298 CDD TLP-PA 25 247 - -
Cco10g0076 298 Pfam Thaumatin family 30 248 IPR001938 -
Cco10g0076 298 Gene3D Thaumatin 24 248 IPR037176 -
Cco10g0076 298 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Cco10g0076 298 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cco10g0076 298 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Cco10g0076 298 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cco10g0076 298 FunFam THAUMATIN-LIKE PROTEIN 1 24 248 - -
Cco10g0076 298 PIRSF PR5 1 292 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1804 Cco-Chr4:32926275 Cco10g0076 Cco-Chr10:712712 1.90E-94 dispersed
Cco08g1606 Cco-Chr8:27606527 Cco10g0076 Cco-Chr10:712712 8.00E-93 dispersed
Cco10g0076 Cco-Chr10:712712 Cco10g1971 Cco-Chr10:33247536 3.60E-66 dispersed
Cco10g0075 Cco-Chr10:699706 Cco10g0076 Cco-Chr10:712712 1.00E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0076 - - - 0.0