Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0087 ATGGATGATATTATTATTTCTCCTTCTTCTTCTTCACCAAATTCAACTACTCCTACTCTTCAACAAAGGCTTCAATTGATCCTCCATAATCGCCCTGAATGGTGGGCTTATTCCATTTTTTGGTGGGCTTCTAAAGATATCACTGGGAATCTTATTTTCACTTGGAGAGATGGGCATTTACGTGGCACCCGAGACGGCGGCGGTAGTGGCGGTGGCGGTGGTGGACAACTCATTGGTTTCGGGTTTGATGAAGTTTCCGTGGATCGAGTGGGAGGTGCCGATTTCACCAACTTGGAATGGTACTATACGGTATCTATCACTCGGTCGTATGGTGCGGTGGATAATGTGGTCGGTCGGGTGTTCGACTCGAGTGCGTACATCTGGTTGACGGCGGACGATGGTCTACATTTGTACGAATGCGAACGAGTAAAAGAAGCACGTTCGCGTGGGATTCAAACGTTGGTTTTTGTTTCTACATCTGTTGGGGTTCTGGAATTGGGTTCTTCTGAGCTGATTAAACAAGATTGGAATTTAGTTCAGTATGCAAAATCACTTTTTGGATCTGCTTCTTCTTCAAGTTTTACACTTTTTAAACAAAAAGATCATGTGGGTACTGGTGGTGGAGGAATAATTCAACCGCAAGCTCCGTCGTGCTCCGGTGTGGTCAAGAGAGAGATGAGCCGTGATGGTGGCCGTGGCGGAGGAGGGTCGTCCTCCGATTCCCTCTCTGATAACTCCGATGGAAATTTCATGTCAATCGTAAATAACAATAACGTCGATAACAAGAGGGGAAAGAGATCAGCAAAGAATAAAACAAAATCCTCGCTGCCTGTCAACCACGTGGAAGCAGAACGGCAGCGACGACAGAAGCTGAACCAACGATTCTACGCGCTCCGATCAGTGGTTCCGAATGTATCGAAAATGGACAAAGCTTCGTTACTCGCCGACGCAGTAGATTACATTAGGGAGCTAAAGTCCAAGGTTCAAAAATTGGAGTCTAAGCTAAAACAACCACAGCACCAAACAAGTAGCAGCATGAGCAATGCATTTGATCAGAACCGAAGCAATATCTCGACGGTCGAGCAGACAATGAGCTCAACGAGTTACGCAATAAACAACAACAACAACAACGTAGAAGTGCGACTTATGGGATCGGAAGCAGTTGTTAGAGTTCAATGCAGAGATGAAAATTACCCATCAGCAAGGCTTTTGAATGTGCTAAGAGATTTGGGACTTCAAGTTCATCATGCAAGTTTGTCAAGTGTAAATGATCTGATGCTGCAAGATGTTATTGTTAGAGTTCCTCATGGAACAGCCTTGAGAGAAAAGACCTTAAAAACAGCCATACTTCAAAGACTTGAATAA 1365 44.69 MDDIIISPSSSSPNSTTPTLQQRLQLILHNRPEWWAYSIFWWASKDITGNLIFTWRDGHLRGTRDGGGSGGGGGGQLIGFGFDEVSVDRVGGADFTNLEWYYTVSITRSYGAVDNVVGRVFDSSAYIWLTADDGLHLYECERVKEARSRGIQTLVFVSTSVGVLELGSSELIKQDWNLVQYAKSLFGSASSSSFTLFKQKDHVGTGGGGIIQPQAPSCSGVVKREMSRDGGRGGGGSSSDSLSDNSDGNFMSIVNNNNVDNKRGKRSAKNKTKSSLPVNHVEAERQRRQKLNQRFYALRSVVPNVSKMDKASLLADAVDYIRELKSKVQKLESKLKQPQHQTSSSMSNAFDQNRSNISTVEQTMSSTSYAINNNNNNVEVRLMGSEAVVRVQCRDENYPSARLLNVLRDLGLQVHHASLSSVNDLMLQDVIVRVPHGTALREKTLKTAILQRLE 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 768670 770683 - CcPI632755_10g000870.1 Cco10g0087 189045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0087 454 PANTHER MYC 16 452 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Cco10g0087 454 MobiDBLite consensus disorder prediction 234 261 - -
Cco10g0087 454 Pfam Helix-loop-helix DNA-binding domain 279 325 IPR011598 GO:0046983(InterPro)
Cco10g0087 454 MobiDBLite consensus disorder prediction 205 287 - -
Cco10g0087 454 MobiDBLite consensus disorder prediction 335 354 - -
Cco10g0087 454 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 186 IPR025610 -
Cco10g0087 454 MobiDBLite consensus disorder prediction 332 354 - -
Cco10g0087 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 343 IPR036638 GO:0046983(InterPro)
Cco10g0087 454 Gene3D - 265 342 IPR036638 GO:0046983(InterPro)
Cco10g0087 454 SMART finulus 281 330 IPR011598 GO:0046983(InterPro)
Cco10g0087 454 Coils Coil 314 341 - -
Cco10g0087 454 CDD bHLH_AtAIB_like 277 349 - -
Cco10g0087 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0087 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1563 Cco-Chr4:30996295 Cco10g0087 Cco-Chr10:768670 2.50E-15 dispersed
Cco06g0279 Cco-Chr6:3047742 Cco10g0087 Cco-Chr10:768670 3.00E-74 dispersed
Cco06g0280 Cco-Chr6:3053152 Cco10g0087 Cco-Chr10:768670 8.10E-72 dispersed
Cco06g1562 Cco-Chr6:26208841 Cco10g0087 Cco-Chr10:768670 4.20E-12 dispersed
Cco07g0023 Cco-Chr7:253791 Cco10g0087 Cco-Chr10:768670 2.50E-08 dispersed
Cco08g1344 Cco-Chr8:25321866 Cco10g0087 Cco-Chr10:768670 3.00E-13 dispersed
Cco09g1216 Cco-Chr9:12304360 Cco10g0087 Cco-Chr10:768670 5.90E-32 dispersed
Cco10g0087 Cco-Chr10:768670 Cco11g1024 Cco-Chr11:18992083 1.80E-29 dispersed
Cco10g0087 Cco-Chr10:768670 Cco10g0168 Cco-Chr10:1645807 5.50E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g242 . . . . . Bpe07g00211 Bma07g01022 . Cmo06g00587 Cmo16g01278 . . . . . Cpe14g01018 . . . . . . . . Cla10g00083 Cam10g0080 Cec10g0083 Cco10g0087 Clacu10g0081 Cmu10g0928 Cre10g0343 . . . . Lsi07g01109 . . Cme06g02389 Blo03g00803 . . . Bpe08g00900 . . . . . . Cma06g00583 Cma16g01232 Car06g00517 Car16g01160 Cpe08g00916 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013416 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60039 PF14215 bHLH-MYC_N 5.60E-35 CL0161 Cco TF