Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0088 ATGGCTGAGTTGAAGAATCATAATTTCTGCGGCACAAAAAGATCGGCCCCCGATGATTCGGAGGACATAAAAAATGATTCAAAGAAATCCACGGCCATGATTTCGTCTATCCTGGAGGATCCAGCGGCTGCGATTGCCAACACGCGTCATGAATTCGGCGAACACGGAGGGGTAAACATGTCAATTGAAGCCTCCGCCACATTCACCGTCATGGAACCGGAGACGATGCGACGGATGTTCGCCGGTGAGTTAGGTCCTGATCGCGATTTCTTCATCTACAGCCGTCATTTCAATCCGACGGTGTTGAATCTCAGCCGTCAGATGGCGGCCCTAGAAGGAACCGCCGCCGCGTACTGCACCGCCAGTGGAATGTCGGCCATCGCCTCCGTTCTCCTCCAACTCCTGGCGAGTGGGGACCACGTAGTGGCTTCTAGAACACTGTACGGTGGGACCCACGCGTTGCTGGCCCATTTTTTGCCGAGGACATCGAACATAACGACGTCGTTTGTGGACATAGGGAATTTGAAAGAGGTAGAGAAGGAAATAGTGGAAGGGAAAACGAAAGTGCTTTATTTTGAATCGGTTTCGAATCCGACGTTGGCGGTGGCGGACATACCAGAATTGTGTCGGATTGGCCGTGAAAAGGGGCTGACGGTGGTGGTGGATAATACTTTTGCGCCCATGGTTCTGTCGCCGGCGAGACTCGGTGCTGACGTCGTCGTTCATAGTATTTCTAAGTTCATTAGCGGTGGAGCTGACATCATTGCAGGTGCGGTGTGTGGACCTGCAAAACTAGTGAACTCGATGATGGACCTACGACAAGGGAGCTTGATGCTTCTAGGGCCAACTATGAATGCAAAGGTGGCATTCGAGCTCTCAGAGAGAATCCCTCACTTGAGCTTGAGGATGAAGGAGCATTGTAGAAGAGCGTTGGTGTTCGCAAAACGAATGAAGAAGGCAGGGTTAAAGGTCATATACCCAGGGCTACCGGACCACCCACACCACCAACTAATGAAGAGCCTCGCCAACCCAGAATATGGGTTCGGGGGTATGTTGTGCATAGACATGGAGACCGAGGAAAGGGCAAATAAGCTCATGAATATACTCCAAAACACCACCCAGTTTGGGTTCATAGCAGTGAGTTTAGGGTACTATGAAACCCTAATGTCTTGCTCAGGCAGCAGCACAAGCAGTGAAATGAGTGGACAAGAAAAGGAATTGGCTGGAATCTCACCCGGGCTCGTGAGAATGTCTATTGGATATATGGGTACATTGGAGCAAAAATGGAGCCAATTTGAGAAGGCTCTTGCCAAAGTCCAAGACATGGGCCTTTCAATTTCCAACAACTTCACGCTTCCACCACGGTTTAACATTCAGCCCTTGCCCCCCGCTCGATTTTCTCCTCCATCTTCCCCCAACAAGCATTTCCGAGCTCCAAGGTGTTTAGGAAGTGGAAAGAAGATAATGGATTCAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGCGGTGGGAATGGATCCGTCATCAATGATACATCAGCATCAACTACAGTGGATGATTCAAAGCAAAACTTGAACCAAGTAATCAACTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCCAACTTCAATGCCGCCTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTAGTTTTGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCACCATCCAGGTCCCTATGGAGGTTCTTAATTTGATCGATGACGGGAAGAATCCAGATGAATTCACGAGGGATGTTTTAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCCTTCAAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCTGATGAAGTTGAATCTTACAGAGAAATTCGTGCTGCTTCTGCTGCTGAAGCAAAAAGGATAGCGCAATCACAAAGTATGTTACCAAATGGGGATATGAAGACAACGTGGGATTTGATGACGGCTAATGAATCAAGACTGCAAAAGCCACACAAGATTAAACATTTAACTGGAACTATCGTATTATACTCATATTCATTGGGCGAGTCAAGGCGGAGAAGAATCACACTATCCTCAAACATCAAACATTGGATTTTACTGGCAGTATCAACCCCATTCAGTGTGTCTGATTCAGGTATGACAACCTCAAAAATAGTAAAGACCCAAAAATATTATATGAAGAAGTGGCCATGGTGTTTTAACCGTTGCTCAGGAGTCATGCAGCACCACCTTAGTCCTCATTTATGCTCGTTCCAAGAGGTGTCAGAGTTCATCTTCCAGCTTCTTTGTGACGGTGGGCACCAGGAACCTTGA 2388 47.15 MAELKNHNFCGTKRSAPDDSEDIKNDSKKSTAMISSILEDPAAAIANTRHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTAAAYCTASGMSAIASVLLQLLASGDHVVASRTLYGGTHALLAHFLPRTSNITTSFVDIGNLKEVEKEIVEGKTKVLYFESVSNPTLAVADIPELCRIGREKGLTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAKLVNSMMDLRQGSLMLLGPTMNAKVAFELSERIPHLSLRMKEHCRRALVFAKRMKKAGLKVIYPGLPDHPHHQLMKSLANPEYGFGGMLCIDMETEERANKLMNILQNTTQFGFIAVSLGYYETLMSCSGSSTSSEMSGQEKELAGISPGLVRMSIGYMGTLEQKWSQFEKALAKVQDMGLSISNNFTLPPRFNIQPLPPARFSPPSSPNKHFRAPRCLGSGKKIMDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVLNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAEAKRIAQSQSMLPNGDMKTTWDLMTANESRLQKPHKIKHLTGTIVLYSYSLGESRRRRITLSSNIKHWILLAVSTPFSVSDSGMTTSKIVKTQKYYMKKWPWCFNRCSGVMQHHLSPHLCSFQEVSEFIFQLLCDGGHQEP 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 801716 816050 - CcPI632755_10g000880.1 Cco10g0088 189046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0088 795 Pfam Cys/Met metabolism PLP-dependent enzyme 49 420 IPR000277 GO:0019346(InterPro)|GO:0030170(InterPro)
Cco10g0088 795 FunFam Cystathionine gamma-lyase 38 297 - -
Cco10g0088 795 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 40 437 IPR000277 GO:0005737(PANTHER)|GO:0016846(PANTHER)|GO:0019346(PANTHER)|GO:0019346(InterPro)|GO:0030170(InterPro)|GO:0030170(PANTHER)
Cco10g0088 795 CDD CGS_like 56 437 IPR000277 GO:0019346(InterPro)|GO:0030170(InterPro)
Cco10g0088 795 SUPERFAMILY PLP-dependent transferases 52 435 IPR015424 -
Cco10g0088 795 Pfam Transcription factor subunit Med10 of Mediator complex 533 646 IPR019145 GO:0003712(InterPro)|GO:0006357(InterPro)|GO:0016592(InterPro)
Cco10g0088 795 Gene3D - 42 296 IPR015421 -
Cco10g0088 795 Gene3D Aspartate Aminotransferase, domain 1 300 439 IPR015422 -
Cco10g0088 795 FunFam Putative methionine gamma-lyase 300 439 - -
Cco10g0088 795 MobiDBLite consensus disorder prediction 492 520 - -
Cco10g0088 795 MobiDBLite consensus disorder prediction 12 28 - -
Cco10g0088 795 MobiDBLite consensus disorder prediction 1 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0088 K01761 - - csv:101214172 800.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0154 Cco-Chr1:1470967 Cco10g0088 Cco-Chr10:801716 1.70E-178 dispersed
Cco10g0088 Cco-Chr10:801716 Cco10g1524 Cco-Chr10:28456093 3.60E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g239 . . . . . . . . . Cmo16g01276 . . . . . Cpe14g01016 . . . . . . . . Cla10g00084 Cam10g0081 Cec10g0085 Cco10g0088 Clacu10g0083 Cmu10g0929 Cre10g0344 . Cone12ag0590 . . Lsi07g01110 . . Cme06g02390 . . . . . . . . . . . Cma06g00584 Cma16g01230 . Car16g01159 Cpe08g00915 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002860 2 1 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 0 2 2 2 2 3 0 2 2 1 2 0 55