Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0112 ATGGCAGCGTCAATGGCGCCGTCTAAGCTGACGGAAGGAGCAGTGATGGTGATATGTAAGAGGGAATCATCGGCAGAGACGTTCCAGCCGATTCTACAAGTAATTGACCTGAAATTGGTTAACACTTCGCAACAATCGGGCAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTACCAGCAAGGAATGCTTGGCACTCAGCTCAATGAATTGGTTAAGTCCGGGAAGTTACAGATAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTTATTGAATTGGATGTGATAGAGGAAATGTGTGAACGTATTGGTGATCCTGTATCAGCGACAAGATCGGTAACTGGTGCATTTAGTGGAAACCCCCTATCCACTGTGGGGGGCCTGGGGGCTTCACCTGGCAGCGGAATAATTGGTAAGGTGAATGTATCTAACGCGTCTTTTGAGCAGCCTAAAGTGAACCAATCACATGTACCGCATATGGGATCTTATTCTAACCCTCCTGAGTCTGGAAGATACTCTGCATCAATTGCGCCTCCTCCTTACTCTAAGACCGATCCTGGAACAAGGTTTAACGGGTCATCTCCTTTAACCGGATCATATGGTGACCAGAAGATGGCATATCACAACAGTGGATCAGATATGCCCAGGCCACCTCTAAATGCTTATGCCCGTCCTCAGCCAATATATCAGCAGCCGCCTCCAATGTACAGTAATAGAGGACCAGTAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTGCTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGCGGTGACGGGAAAGTCTTTTCATTTGATTTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTATAACCATCTAAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTTCATTTCCATCAGATTAGTGAGATCGAGGGCATGGACAGCAACAGTGTTGTAGACGTAATTGGTATTGTTTCTTCCATTAATCCTGCAACTTCTTTAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCCCTTCAGTTGAATGATATGTCCGGTCGAAGTGTTGAATTGACTCTTTGGGGAAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCAGGGTTGTTTCCAGTTTTGGCTGTGAAATCTAGCAGAGTGAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTTTTTGTAGAGCCAGATTTCCCTGAGGCTCGTACGCTAAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGTTACACAGCATGTCCTATCATGATTGGGGATCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGGCAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAACAAGATGATGAGAAATTTGCTGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGATGAAAGCAGAAAGCATTGATTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGATAAACTCAGGGCAGAGAACACTAGTTCTGTTACCCCAAAGGCAGAGAACACCATACATAATCTCGGATTTCGTGACCCTGCATCTGGGAATATTGGTGGTGGACAGTTTGTATCACCCATTCGAAATAGCACCAATGTCGGCAGAGACTATGCCACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGCTCTAGGCCTTCTCCATCCACACAGTTTAACTCGACCACGTACTGCAACAGCTGTGGGGGCTCTGGCCACAGCTCAACAAACTGCCCAAGTATTATGAGCGGTCCTGCGCTATCTGTTGGAGGGGGGATGTATTCAAATAGAGCTTCTGGTCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGTCCTGGTTTGGCCTCTGTCCCTCCAGCTTATGGCAACAGCGGCTTCACGGCTAGGTGA 2580 44.46 MAASMAPSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHYQQGMLGTQLNELVKSGKLQIGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCERIGDPVSATRSVTGAFSGNPLSTVGGLGASPGSGIIGKVNVSNASFEQPKVNQSHVPHMGSYSNPPESGRYSASIAPPPYSKTDPGTRFNGSSPLTGSYGDQKMAYHNSGSDMPRPPLNAYARPQPIYQQPPPMYSNRGPVAKNEAAPRIMPIAALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGIVSSINPATSLMRKNGTETQKRSLQLNDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCGRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTESRFLLDLMDKLRAENTSSVTPKAENTIHNLGFRDPASGNIGGGQFVSPIRNSTNVGRDYATPNQGVQYGNQYSSSRPSPSTQFNSTTYCNSCGGSGHSSTNCPSIMSGPALSVGGGMYSNRASGPSGGASGECFKCHQTGHWARDCPGLASVPPAYGNSGFTAR 859
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 1013816 1017622 + CcPI632755_10g001120.1 Cco10g0112 189070

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0112 859 CDD RPA1_DBD_B 398 505 - -
Cco10g0112 859 FunFam Replication protein A subunit 263 373 - -
Cco10g0112 859 Gene3D - 376 514 IPR012340 -
Cco10g0112 859 SUPERFAMILY Nucleic acid-binding proteins 529 706 IPR012340 -
Cco10g0112 859 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Cco10g0112 859 NCBIfam replication factor-a protein 1 (rpa1) 243 705 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cco10g0112 859 ProSiteProfiles Zinc finger CCHC-type profile. 784 799 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco10g0112 859 MobiDBLite consensus disorder prediction 199 219 - -
Cco10g0112 859 MobiDBLite consensus disorder prediction 164 184 - -
Cco10g0112 859 Pfam OB-fold nucleic acid binding domain 277 361 IPR004365 GO:0003676(InterPro)
Cco10g0112 859 ProSiteProfiles Zinc finger CCHC-type profile. 828 842 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco10g0112 859 Gene3D - 263 372 IPR012340 -
Cco10g0112 859 Pfam Replication protein A OB domain 387 490 IPR031657 -
Cco10g0112 859 Gene3D - 515 706 IPR012340 -
Cco10g0112 859 Pfam Zinc knuckle 827 842 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco10g0112 859 SMART c2hcfinal6 827 843 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco10g0112 859 SMART c2hcfinal6 783 799 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco10g0112 859 SUPERFAMILY Nucleic acid-binding proteins 263 376 IPR012340 -
Cco10g0112 859 Pfam Replication factor-A C terminal domain 548 699 IPR013955 -
Cco10g0112 859 PANTHER REPLICATION FACTOR A 1, RFA1 266 682 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cco10g0112 859 FunFam Replication protein A subunit 376 514 - -
Cco10g0112 859 Gene3D - 779 846 - -
Cco10g0112 859 FunFam Replication protein A subunit 9 123 - -
Cco10g0112 859 MobiDBLite consensus disorder prediction 164 251 - -
Cco10g0112 859 CDD RPA1_DBD_A 266 369 - -
Cco10g0112 859 CDD RPA1_DBD_C 532 705 IPR047192 -
Cco10g0112 859 CDD RPA1N 13 109 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cco10g0112 859 FunFam Replication protein A subunit 515 706 - -
Cco10g0112 859 SUPERFAMILY Nucleic acid-binding proteins 382 510 IPR012340 -
Cco10g0112 859 Gene3D - 8 123 IPR012340 -
Cco10g0112 859 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cco10g0112 859 SUPERFAMILY Retrovirus zinc finger-like domains 809 847 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0112 K07466 - - csv:101211358 1601.65
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0112 Cco-Chr10:1013816 Cco11g0176 Cco-Chr11:1770004 4.40E-194 dispersed
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g886 . . . . . Bpe07g00251 . . Cmo06g00609 Cmo16g01260 . . . . . Cpe14g01003 . . . . . . . . Cla10g00108 Cam10g0103 Cec10g0110 Cco10g0112 Clacu10g0107 Cmu10g0955 Cre10g0366 . . . . Lsi07g01137 . . Cme06g02413 . . . . . . . Bma12g00253 . . . Cma06g00602 Cma16g01216 Car06g00537 Car16g01142 . . . . . . . . . . . . . . . . . Csa03g00107 Chy06g02198 .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0051 . 106 692 Core DNA Replication Machinery Family AT4G14700 65.4 1.5e-220 763.1
Cco08g0051 . 20 692 Core DNA Replication Machinery Family AT4G12620 61.6 4.0e-229 791.6
Cco08g1757 . 65 436 Core DNA Replication Machinery Family AT2G37560 57.3 2.2e-123 439.1
Cco07g0493 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.5e-152 535.0
Cco06g0369 . 3 534 Core DNA Replication Machinery Family AT4G29910 56.9 3.3e-169 592.0
Cco11g0902 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.5 3.6e-92 335.1
Cco09g2466 . 68 864 Core DNA Replication Machinery Family AT1G79150 58.7 1.4e-248 856.3
Cco10g1289 . 8 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1348.6
Cco04g2230 . 102 676 Core DNA Replication Machinery Family AT5G46280 80.9 1.8e-268 921.8
Cco02g0511 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1146.3
Cco11g0380 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.1
Cco04g2395 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.9 0.0e+00 1153.7
Cco09g0502 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cco02g2101 . 55 521 Core DNA Replication Machinery Family AT2G29680 62.1 3.1e-163 572.0
Cco02g2101 . 37 482 Core DNA Replication Machinery Family AT1G07270 59.2 7.5e-143 504.2
Cco09g0862 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cco10g2049 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.2
Cco09g1753 . 44 464 Core DNA Replication Machinery Family AT2G14050 82.4 4.2e-197 684.9
Cco09g1752 . 9 237 Core DNA Replication Machinery Family AT2G14050 69.0 7.9e-87 318.5
Cco02g1292 . 1955 2365 Core DNA Replication Machinery Family AT2G20980 56.1 7.0e-118 421.0
Cco09g0260 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 2.3e-72 268.9
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 3.9e-71 264.6
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 3.9e-71 264.6
Cco05g0179 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 8.8e-50 193.7
Cco02g1335 . 1 1521 Core DNA Replication Machinery Family AT5G67100 59.0 0.0e+00 1711.8
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco08g0215 . 144 587 Core DNA Replication Machinery Family AT5G41880 65.0 2.9e-176 615.1
Cco04g1267 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cco10g1734 . 1 441 Core DNA Replication Machinery Family AT2G42120 72.1 1.6e-192 669.1
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco01g0571 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.0 3.2e-37 151.4
Cco02g2358 . 1 1866 Core DNA Replication Machinery Family AT1G08260 74.8 0.0e+00 2799.6
Cco09g2253 . 1 1999 Core DNA Replication Machinery Family AT1G08260 69.1 0.0e+00 2770.3
Cco09g2253 . 1 2090 Core DNA Replication Machinery Family AT2G27120 66.0 0.0e+00 2739.1
Cco02g2358 . 25 1861 Core DNA Replication Machinery Family AT2G27120 71.9 0.0e+00 2632.4
Cco01g1863 . 7 496 Core DNA Replication Machinery Family AT5G22110 63.0 4.9e-169 591.3
Cco02g2410 . 108 1032 Core DNA Replication Machinery Family AT5G22010 63.3 2.4e-307 1051.6
Cco10g0353 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.2e-173 605.1
Cco04g0633 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cco11g1646 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 3.3e-153 538.1
Cco08g0722 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 4.6e-156 547.7
Cco11g0176 . 26 607 Core DNA Replication Machinery Family AT2G06510 68.0 4.0e-245 844.3
Cco10g0112 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.1 2.4e-194 675.6
Cco06g1757 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 2.9e-248 854.7
Cco10g0112 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.5 2.8e-225 778.9
Cco06g1757 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.0e-240 828.2
Cco10g0112 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.5 1.1e-223 773.5
Cco03g1856 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.7 2.7e-189 658.3
Cco05g0323 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.4 6.2e-299 1023.8
Cco07g1648 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 2.3e-115 412.1
Cco02g2308 . 2 762 Core DNA Replication Machinery Family AT1G08130 68.8 4.8e-296 1013.8
Cco02g2308 . 162 762 Core DNA Replication Machinery Family AT1G49250 68.6 1.1e-240 829.7
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35