Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g0112 | ATGGCAGCGTCAATGGCGCCGTCTAAGCTGACGGAAGGAGCAGTGATGGTGATATGTAAGAGGGAATCATCGGCAGAGACGTTCCAGCCGATTCTACAAGTAATTGACCTGAAATTGGTTAACACTTCGCAACAATCGGGCAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTACCAGCAAGGAATGCTTGGCACTCAGCTCAATGAATTGGTTAAGTCCGGGAAGTTACAGATAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTTATTGAATTGGATGTGATAGAGGAAATGTGTGAACGTATTGGTGATCCTGTATCAGCGACAAGATCGGTAACTGGTGCATTTAGTGGAAACCCCCTATCCACTGTGGGGGGCCTGGGGGCTTCACCTGGCAGCGGAATAATTGGTAAGGTGAATGTATCTAACGCGTCTTTTGAGCAGCCTAAAGTGAACCAATCACATGTACCGCATATGGGATCTTATTCTAACCCTCCTGAGTCTGGAAGATACTCTGCATCAATTGCGCCTCCTCCTTACTCTAAGACCGATCCTGGAACAAGGTTTAACGGGTCATCTCCTTTAACCGGATCATATGGTGACCAGAAGATGGCATATCACAACAGTGGATCAGATATGCCCAGGCCACCTCTAAATGCTTATGCCCGTCCTCAGCCAATATATCAGCAGCCGCCTCCAATGTACAGTAATAGAGGACCAGTAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTGCTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGCGGTGACGGGAAAGTCTTTTCATTTGATTTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTATAACCATCTAAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTTCATTTCCATCAGATTAGTGAGATCGAGGGCATGGACAGCAACAGTGTTGTAGACGTAATTGGTATTGTTTCTTCCATTAATCCTGCAACTTCTTTAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCCCTTCAGTTGAATGATATGTCCGGTCGAAGTGTTGAATTGACTCTTTGGGGAAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCAGGGTTGTTTCCAGTTTTGGCTGTGAAATCTAGCAGAGTGAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTTTTTGTAGAGCCAGATTTCCCTGAGGCTCGTACGCTAAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGTTACACAGCATGTCCTATCATGATTGGGGATCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGGCAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAACAAGATGATGAGAAATTTGCTGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGATGAAAGCAGAAAGCATTGATTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGATAAACTCAGGGCAGAGAACACTAGTTCTGTTACCCCAAAGGCAGAGAACACCATACATAATCTCGGATTTCGTGACCCTGCATCTGGGAATATTGGTGGTGGACAGTTTGTATCACCCATTCGAAATAGCACCAATGTCGGCAGAGACTATGCCACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGCTCTAGGCCTTCTCCATCCACACAGTTTAACTCGACCACGTACTGCAACAGCTGTGGGGGCTCTGGCCACAGCTCAACAAACTGCCCAAGTATTATGAGCGGTCCTGCGCTATCTGTTGGAGGGGGGATGTATTCAAATAGAGCTTCTGGTCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGTCCTGGTTTGGCCTCTGTCCCTCCAGCTTATGGCAACAGCGGCTTCACGGCTAGGTGA | 2580 | 44.46 | MAASMAPSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHYQQGMLGTQLNELVKSGKLQIGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCERIGDPVSATRSVTGAFSGNPLSTVGGLGASPGSGIIGKVNVSNASFEQPKVNQSHVPHMGSYSNPPESGRYSASIAPPPYSKTDPGTRFNGSSPLTGSYGDQKMAYHNSGSDMPRPPLNAYARPQPIYQQPPPMYSNRGPVAKNEAAPRIMPIAALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGIVSSINPATSLMRKNGTETQKRSLQLNDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCGRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVMKAESIDFSTESRFLLDLMDKLRAENTSSVTPKAENTIHNLGFRDPASGNIGGGQFVSPIRNSTNVGRDYATPNQGVQYGNQYSSSRPSPSTQFNSTTYCNSCGGSGHSSTNCPSIMSGPALSVGGGMYSNRASGPSGGASGECFKCHQTGHWARDCPGLASVPPAYGNSGFTAR | 859 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1013816 | 1017622 | + | CcPI632755_10g001120.1 | Cco10g0112 | 189070 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g0112 | 859 | CDD | RPA1_DBD_B | 398 | 505 | - | - | |
| Cco10g0112 | 859 | FunFam | Replication protein A subunit | 263 | 373 | - | - | |
| Cco10g0112 | 859 | Gene3D | - | 376 | 514 | IPR012340 | - | |
| Cco10g0112 | 859 | SUPERFAMILY | Nucleic acid-binding proteins | 529 | 706 | IPR012340 | - | |
| Cco10g0112 | 859 | SUPERFAMILY | Nucleic acid-binding proteins | 8 | 117 | IPR012340 | - | |
| Cco10g0112 | 859 | NCBIfam | replication factor-a protein 1 (rpa1) | 243 | 705 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cco10g0112 | 859 | ProSiteProfiles | Zinc finger CCHC-type profile. | 784 | 799 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cco10g0112 | 859 | MobiDBLite | consensus disorder prediction | 199 | 219 | - | - | |
| Cco10g0112 | 859 | MobiDBLite | consensus disorder prediction | 164 | 184 | - | - | |
| Cco10g0112 | 859 | Pfam | OB-fold nucleic acid binding domain | 277 | 361 | IPR004365 | GO:0003676(InterPro) | |
| Cco10g0112 | 859 | ProSiteProfiles | Zinc finger CCHC-type profile. | 828 | 842 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cco10g0112 | 859 | Gene3D | - | 263 | 372 | IPR012340 | - | |
| Cco10g0112 | 859 | Pfam | Replication protein A OB domain | 387 | 490 | IPR031657 | - | |
| Cco10g0112 | 859 | Gene3D | - | 515 | 706 | IPR012340 | - | |
| Cco10g0112 | 859 | Pfam | Zinc knuckle | 827 | 842 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cco10g0112 | 859 | SMART | c2hcfinal6 | 827 | 843 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cco10g0112 | 859 | SMART | c2hcfinal6 | 783 | 799 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cco10g0112 | 859 | SUPERFAMILY | Nucleic acid-binding proteins | 263 | 376 | IPR012340 | - | |
| Cco10g0112 | 859 | Pfam | Replication factor-A C terminal domain | 548 | 699 | IPR013955 | - | |
| Cco10g0112 | 859 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 266 | 682 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Cco10g0112 | 859 | FunFam | Replication protein A subunit | 376 | 514 | - | - | |
| Cco10g0112 | 859 | Gene3D | - | 779 | 846 | - | - | |
| Cco10g0112 | 859 | FunFam | Replication protein A subunit | 9 | 123 | - | - | |
| Cco10g0112 | 859 | MobiDBLite | consensus disorder prediction | 164 | 251 | - | - | |
| Cco10g0112 | 859 | CDD | RPA1_DBD_A | 266 | 369 | - | - | |
| Cco10g0112 | 859 | CDD | RPA1_DBD_C | 532 | 705 | IPR047192 | - | |
| Cco10g0112 | 859 | CDD | RPA1N | 13 | 109 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Cco10g0112 | 859 | FunFam | Replication protein A subunit | 515 | 706 | - | - | |
| Cco10g0112 | 859 | SUPERFAMILY | Nucleic acid-binding proteins | 382 | 510 | IPR012340 | - | |
| Cco10g0112 | 859 | Gene3D | - | 8 | 123 | IPR012340 | - | |
| Cco10g0112 | 859 | Pfam | Replication factor-A protein 1, N-terminal domain | 10 | 110 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Cco10g0112 | 859 | SUPERFAMILY | Retrovirus zinc finger-like domains | 809 | 847 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco10g0112 | Cco-Chr10:1013816 | Cco11g0176 | Cco-Chr11:1770004 | 4.40E-194 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g0112 | K07466 | - | csv:101211358 | 1601.65 |