Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0115 ATGGAAACCAGTATCTTTACCTTGGTTGGCACGCAGCAAAGATCTCGTGTTCTTTTGGGAATTCGTCTGGTTTCTTCGTGGCTTGGAGAAAATTTGAGGGAAGAAGAAGAGCGTCAAGGGAAGCTCTGGATCCCAATTCTTCCCGTTCTTGGCGACGGAGGGTTTTATCTGGACGAGCTCGAGATGCCTGTCTTCTTGTATTGGTTATTGATTAGGGTTTTTGAGGGCTTGGATATAAAGGGATTTTTATATTTTCTCGAGATATGGAGCTTGCTTCTATTTGGACAAATTGCTTCCAGCATCGAGTTTGTTCTTTTCAGGAAGTGCTTGATTGGCGTTTCCTTGTCCTTGGAGATTTTCTTTTGGTGTTGGATCGTTACTGCAACTGTTCAAAGCATTGTTGATGCAGCATCGGAACGATTTTCTAGGGGAAACTTCTTGAGGGTGGTGGTTTTTGCTAGATCAGTGCACGACGATCGTTTACTTCTTAGTCTTTATATAAAGATAAATGCAAGTTATCATTTTGAAGTTTCTCTACTTCTTTTGAATAAGGGAGGTTGTCTTTGTGCTTCTACGAGGAAAATGGAGAGGTACATGTTAATCAAGGAAGTTGGTGATGGTACTTTTGGAAGTGTCTGGCGAGCTATCAATAAGCAGACTGGGGAAGTTGTTGCAATCAAGAAAATGAAGAAAAAATATTACACATGGGAGGAGTGTGTCAATCTGAGAGAAGTGAAGTCATTGCGCAAGATGAATCATCCAAATATTGTGAAGCTCAAAGAAGTTATCAGGGAAAACAATATCTTGTACTTTGTATTTGAATACATGGAATGCAATCTTTACCAACTTATGAAGGATAGGGAAAAGCTCTTCTCAGAAGCTGAAGTGCGGAATTGGTGCTTTCAAGTTTTTCAAGGTCTTGCCTACATGCATCAGCGGGGATATTTTCACCGTGACCTCAAACCAGAAAATTTACTAGTTGCTAAAGACTTGATAAAACTTGCTGATTTTGGGCTTGCTCGTGAAACTAGTGCTATACCACCCTATACGGAGTATGTTTCAACACGGTGGTACAGAGCTCCAGAGGTGCTGCTTCAGTCCTATCTCTATGGTCCTAAAGTTGATATGTGGGCAATGGGTGCTATAATGGCGGAGCTGTTTACTCTTCGTCCACTTTTTCCAGGAGCAAGTGAAACAGACCAAATCTACAAAATTTGCAATATTCTCGGCACTCCAACTATGGATACATGGTCTGGTGGGCTTTGTCTTGCAAGGAACATCAATTATCAATTCCCGCAGTTTAAAGGTGTTCATCTCTCTGTTGTTATTCCCTCAGCCAGTGATGATGCAGTCAATCTTATTGCATCACTTTGTTCATGGGATCCGTCCAAGAGACCAACCGCTATGGAAGCCCTCCAACATCCCTTCTTCCAAAGTTGCTACTACGTTCCACCGTCTCTTCGTGCTAGAGCACCAATCACTCGGACCCCTCCTTCTGTTGGAACAAAGGAATTGCTGGAGCAGCAGACTGCTAAAAGATATCCTGTGGCTTTATCTGATTCAAGAATTGCCGGTAATTTCTCCTCTCCGAAGTTGCCTGCGTTGTTGAGCACAGGTGTGCAGAGGAAGTTGGATTTGATGAACCAGGATGCAAATAAGAACGATAAAACTACGAAAAGCACCATTAGACAACAGAAATACCGACCGCCTGTGAGGAATAGCCCTACAAACTCCATCTACAAGGGAAATAATGTGCGTGGAGTTTCAGATACAGGTGAAAAGTTGGCAAACATGACAATCGCCCCTCGCAAGCCATCTATTGGGCAGCTTCCTCGTCCGATGAAAGCGGGTGTTCGTTGGAGCGGTTCCTCCAGTGATCTGTTAATAAGGCCCGCCCAAGAGTTTCAACCTGGCAGCAATTACCCGAGGAAGGTGGCTGGATGA 1944 43.52 METSIFTLVGTQQRSRVLLGIRLVSSWLGENLREEEERQGKLWIPILPVLGDGGFYLDELEMPVFLYWLLIRVFEGLDIKGFLYFLEIWSLLLFGQIASSIEFVLFRKCLIGVSLSLEIFFWCWIVTATVQSIVDAASERFSRGNFLRVVVFARSVHDDRLLLSLYIKINASYHFEVSLLLLNKGGCLCASTRKMERYMLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYTWEECVNLREVKSLRKMNHPNIVKLKEVIRENNILYFVFEYMECNLYQLMKDREKLFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVAKDLIKLADFGLARETSAIPPYTEYVSTRWYRAPEVLLQSYLYGPKVDMWAMGAIMAELFTLRPLFPGASETDQIYKICNILGTPTMDTWSGGLCLARNINYQFPQFKGVHLSVVIPSASDDAVNLIASLCSWDPSKRPTAMEALQHPFFQSCYYVPPSLRARAPITRTPPSVGTKELLEQQTAKRYPVALSDSRIAGNFSSPKLPALLSTGVQRKLDLMNQDANKNDKTTKSTIRQQKYRPPVRNSPTNSIYKGNNVRGVSDTGEKLANMTIAPRKPSIGQLPRPMKAGVRWSGSSSDLLIRPAQEFQPGSNYPRKVAG 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1042883 1048648 + CcPI632755_10g001150.1 Cco10g0115 189073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0115 647 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 195 512 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco10g0115 647 MobiDBLite consensus disorder prediction 563 585 - -
Cco10g0115 647 FunFam cyclin-dependent kinase F-4-like 195 277 - -
Cco10g0115 647 MobiDBLite consensus disorder prediction 548 592 - -
Cco10g0115 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0115 647 FunFam serine/threonine-protein kinase MAK isoform X1 278 487 - -
Cco10g0115 647 MobiDBLite consensus disorder prediction 548 562 - -
Cco10g0115 647 MobiDBLite consensus disorder prediction 628 647 - -
Cco10g0115 647 Gene3D Transferase(Phosphotransferase) domain 1 278 486 - -
Cco10g0115 647 ProSiteProfiles Protein kinase domain profile. 198 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0115 647 Pfam Protein kinase domain 198 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0115 647 CDD STKc_MAK_like 198 477 - -
Cco10g0115 647 ProSitePatterns Protein kinases ATP-binding region signature. 204 228 IPR017441 GO:0005524(InterPro)
Cco10g0115 647 Gene3D Phosphorylase Kinase; domain 1 188 277 - -
Cco10g0115 647 SMART serkin_6 198 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0115 647 SUPERFAMILY Protein kinase-like (PK-like) 192 482 IPR011009 -
Cco10g0115 647 MobiDBLite consensus disorder prediction 604 623 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0115 K08829 - - csv:101210621 899.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2440 Cco-Chr9:38590643 Cco10g0115 Cco-Chr10:1042883 1.90E-44 dispersed
Cco10g0115 Cco-Chr10:1042883 Cco11g1957 Cco-Chr11:32088666 1.80E-51 dispersed
Cco10g0115 Cco-Chr10:1042883 Cco08g1903 Cco-Chr8:30030380 6.40E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g880 . . . . . . Bma07g00966 Bma14g00111 Cmo06g00611 Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla10g00110 Cam10g0105 Cec10g0114 Cco10g0115 Clacu10g0111 Cmu10g0958 Cre10g0368 . . . . Lsi07g01139 . . Cme06g02415 Blo03g00840 . Bda07g00139 . Bpe08g01075 . . . . . . Cma06g00604 Cma16g00526 Car06g00539 Car16g01140 . . . . . . . . . . . . . . . . . Csa03g00109 Chy06g02196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005380 1 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87131 PF00069 Pkinase 1.40E-74 CL0016 Cco PK