Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0116 ATGTGGGCCCAGGCTGTCCTCCGTGAGAATCAGCGAGTGATAGTGGAGTTAGAGAATGTTTTGTTTCTCAGTGTAACTGCAGAAATTAAGCGAGAATATGCTCTGTTCGGCGATGTTTTAGGGATTTTGATTGCTGTTGCTGTTGGTTGTCATTGCTTAGTGGTGAAGAATTTTCTTGGCAGCCAAACAGTGTGCGGTGGATTTCAGTTCCATTTTCGGTGGATAAAAGCTTCGAGAGTAAAAAAAAGGCAAAACGACGGGGGTGAGGATGGGGCTGCGCGTGGGAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATAAAGGACATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAGAGACCTTACCCAGATTTTGACACAGCTTCAGAAGGGGTACCATACCCTTACATAGGAGGGGCAAGTGCAAGTTCAACTCCTGCTTGGGACTTCCCTCCTGTTAGTCGCCACCCACATGTTAGATCTGAGTCTAGATTTAAAGGGACTTTCAGAGGAGATCAGACCCCTGGAGGCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGGATGAGCCGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGAGAGAACTATGATAGAATAACGGAGCTCTATAATGTCCAGAGATTCAATCAACAAGCTCTTCATACGCCACCGAGAACTGAGGACGGGAGGGATTCTTCATACTCAAAGATGGGAAGGGACAGTCCGATGACTTCCGCAAACAAAGATTGGACGCCGAGAAACTATAAACCTTCTGGAAGTAAAGGATTTCCATCTGACCAGCATTTTGATCATGGAAGCAGCCACCCCTATGCAGGCTCAAGTGCCTACCCAGCAGGCAGCACCAAAGGTGACATGTCGTCTATGGAAGCATCACGCACAACTACCTCTTCTAGAGACGAACCTTCAATTTCCATTAGCAATGCAAGCGACATCGAGGCAGAATGGGTCGAGGAAGATGAGCCGGGGGTCTATATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTTAGATTCAGCCGTGAAAGGTTCGGGGAAATGAACGCAAAGCAATGGTGGGAACACAACAGGGAGAGGATCCAAGCTCAATACCTATAA 1305 47.74 MWAQAVLRENQRVIVELENVLFLSVTAEIKREYALFGDVLGILIAVAVGCHCLVVKNFLGSQTVCGGFQFHFRWIKASRVKKRQNDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVSRHPHVRSESRFKGTFRGDQTPGGDSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSANKDWTPRNYKPSGSKGFPSDQHFDHGSSHPYAGSSAYPAGSTKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEHNRERIQAQYL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1050446 1056950 - CcPI632755_10g001160.1 Cco10g0116 189074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0116 434 MobiDBLite consensus disorder prediction 276 372 - -
Cco10g0116 434 MobiDBLite consensus disorder prediction 83 104 - -
Cco10g0116 434 Pfam Transcription factor regulating root and shoot growth via Pin3 378 433 IPR013591 -
Cco10g0116 434 Pfam Transcription factor regulating root and shoot growth via Pin3 215 269 IPR013591 -
Cco10g0116 434 MobiDBLite consensus disorder prediction 296 320 - -
Cco10g0116 434 Pfam Transcription factor BRX N-terminal domain 96 129 IPR027988 -
Cco10g0116 434 MobiDBLite consensus disorder prediction 345 372 - -
Cco10g0116 434 PANTHER PROTEIN BREVIS RADIX-LIKE 1 82 434 IPR044532 -
Cco10g0116 434 ProSiteProfiles BRX domain profile. 215 270 IPR013591 -
Cco10g0116 434 ProSiteProfiles BRX domain profile. 379 434 IPR013591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0116 Cco-Chr10:1050446 Cco11g0178 Cco-Chr11:1780322 8.90E-50 dispersed
Cco10g0116 Cco-Chr10:1050446 Cco09g0084 Cco-Chr9:760108 1.70E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0116 - - - 0.0