Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0129 ATGTCGGCCGAAACAGAAAGAAGGGAGGAAGAGAACTGGAGGGAATTGGTGAAGAAGATGCTCCCACCTGGAGTATCTCTCCCTGAAAGTGTTAGCGATCTGGATTACTCTATAGCTACGGAGTACGAGGGTCCACCAGTAGTCTATGACGTTCCAAGAGTCGAACCCCTTGACGTACATCCTCATTCAATTCCAGTTGCTGAACCTTTATCTGAATCCCAAAGGTCCATTGCAAATAATGGTCCTCCGACAATTGAACCAATTCCTTTGCCAGTTTCTCGTATTGTTGGTGTCACAAGTTCGCCTACTCAAAGTCCAAGGGTATCGGGAAGTTCAGAGTCTGTAGTATCCGTCTTGCAAAACCATGATTTTTCTTCAGCTTCACCTTCTGCCTCCCCGGCTTCAGTTCACAACCCTCCTAACAATCAACCTAAACCAGTAGTTATTGATGCAAGGAGAGCACCTGTTGTCACTTTTAATACTGTTGATCACTCCCATCGAAAAGAACTTACTGTCGAGAAGCAAGTGTATCCAGAATATGTAGGAGTTTCAAAAGAGAAAAAGAAAAAGAAAAGTAGAGTGTGTTATAGGTGTGGGAAAGGAAAGTGGGAAACAAAGGAGTCATGTCTAGTTTGTGATGCCAAATATTGCAGCAATTGTGTGCTTAGGGCCATGGGATCAATGCCCGAAGGGCGTAAATGTGTCACTTGCATTGGTGATCCTATAGACGAATCTAAGAGGTCAAAATTGGGTAAGCATTCGAGGGTCTTGTCTCGACTACTTAGTCCTTTGGAAGTGAGGCAAATTATGAAAGCGGAAAAAGAATGTCCTGCTAATCAACTTCGTCCAGAACAGCTGATTGTAAATGGATTACCCCTAAGGTCCGAAGAGATGGCAGAATTACTTGGATGCCCTCTTCCTCCTCAGAAATTGAAACCTGGAAGGTATTGGTACGACAAAGAATCTGGTCTCTGGGGAAAGGAAGGAGAAAAACCAGATAGAATCATTAGTTCAAATCTAAGTTTCACTGGCAAACTTAGCCCCCATGCAAGCAATGGAAACACCGAAGTTTACATCAATGGTCGAGAAATCACTAGACTCGAATTAAGGGTGCTTAAGTTGGCAAATGTACAATGCCCACGTGACACCCATTTTTGGGTATACGATGATGGTCGCTATGAGGAAGAAGGTCAAAACAATATCAGAGGAAATATTTGGGAGAAGGCTTCAACACGCTTTGTTTGTGCTTTGTTCTCATTGCCTGTGCCACACGGTCAACCACCTCATGGAGTGAGAGAAGAGGCTAGCAATTATACAACAGTTCCCAACTATTTTGAACAACAAAAGAGAATTCAGAAACTTCTTCTCATTGGGATTGAAGGCTCTGGAACTAGCACTATCTTTAAGCAGGGAAAATTTTTGTATGGGAACAGATTTAGTGAAGAAGAACTTCAAGACATCAAGCTAATGATTCAGAGTAATATGTACAAGTATCTTAGTATCTTACTTGATGGTCGAGAACGCTTTGAGGAGGAGATCATAAACAGGAAAAAAGCTCCATGTTCCCAGGGGGATCAAGTTCTCGAAACTGATGGAGAGAAGGAAGCTAGTGAAAGTATATACTCCATCAACCCAAGGTTGAAACATTTTTCTGATTGGCTCCTTGATATCATTGCCACTGGAGATTTGGATGCATTCTTTCCGGCTGCAACTCGTGAGTATGCTCCATTAGTCGAAGAGCTATGGAAGGACCCTGCAATCCAGGAAACTTACAAGAGAAAAAATGAGCTCCATTTTCTTCCCGATGTTGCCGAGTATTTCTTAAGCAGGGCAGTGGAGGTTTCAAGCAACGAATACGAACCTTCTGATCGGGATATCCTGTATGCAGAAGGGGTAACCCAAGGGAATGGATTGGCTTTCATGGAATTTTCCCTTGATGATCGGAGTCCAATGTCCGAGACCTACACGGATAATCTTGAAGCTCCGCCCCCACCTCTCACTAGATACCAACTTATAAGGGTAAGTGCCAAAGGGATGAATGAAGGGTGCAAGTGGGTAGAGATGTTTGAAGATGTTCGAGTCGTTGTCTTTTGCGTTGCTCTTAGTGATTTTGATCAGATGTCTCTCGCCCCAGAAGGTAGTGGCAGCGGAAACCTATTACAAAACAAGATGATGCAGAGCAAGGAGCTTTTTGAGACGATGGTCCGACACCCTTGCTTCAGAAATACCCCATTCGTGTTGATACTCAACAAGTATGATCTCTTTGAAGAGAAAGTAAATCGGGGGTCATTGAATGTTTGCGAATGGTTTAACGATTTTAGCCCGGTGAGACCGCTGCATAGCAACCAGTCACTATCACATCAAGCTTACTACTATGTAGCTATGAAATTCAAAGACCTTTATCAATCCATCACGGGTCGTAAGCTTTTTGTTTGGCAAGCTAGAGCAAGGGACCGAGTGACTATTGACGAGGCATTCAAGTATATAAGAGAAGTTGTCAAGTGGGATGAGGAGAAAGAGGAGAACTACTATGGTGGACCTGAGGATTCCTTCTATAGCACAGATGTGAGCTCATCTCCATTTGTTAGACAACAATGA 2598 43.34 MSAETERREEENWRELVKKMLPPGVSLPESVSDLDYSIATEYEGPPVVYDVPRVEPLDVHPHSIPVAEPLSESQRSIANNGPPTIEPIPLPVSRIVGVTSSPTQSPRVSGSSESVVSVLQNHDFSSASPSASPASVHNPPNNQPKPVVIDARRAPVVTFNTVDHSHRKELTVEKQVYPEYVGVSKEKKKKKSRVCYRCGKGKWETKESCLVCDAKYCSNCVLRAMGSMPEGRKCVTCIGDPIDESKRSKLGKHSRVLSRLLSPLEVRQIMKAEKECPANQLRPEQLIVNGLPLRSEEMAELLGCPLPPQKLKPGRYWYDKESGLWGKEGEKPDRIISSNLSFTGKLSPHASNGNTEVYINGREITRLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVPHGQPPHGVREEASNYTTVPNYFEQQKRIQKLLLIGIEGSGTSTIFKQGKFLYGNRFSEEELQDIKLMIQSNMYKYLSILLDGRERFEEEIINRKKAPCSQGDQVLETDGEKEASESIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKNELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFMEFSLDDRSPMSETYTDNLEAPPPPLTRYQLIRVSAKGMNEGCKWVEMFEDVRVVVFCVALSDFDQMSLAPEGSGSGNLLQNKMMQSKELFETMVRHPCFRNTPFVLILNKYDLFEEKVNRGSLNVCEWFNDFSPVRPLHSNQSLSHQAYYYVAMKFKDLYQSITGRKLFVWQARARDRVTIDEAFKYIREVVKWDEEKEENYYGGPEDSFYSTDVSSSPFVRQQ 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1185737 1191372 - CcPI632755_10g001290.1 Cco10g0129 189087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0129 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 838 IPR027417 -
Cco10g0129 865 CDD G-alpha 452 836 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cco10g0129 865 PRINTS Alpha G protein (transducin) signature 619 641 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cco10g0129 865 PRINTS Alpha G protein (transducin) signature 692 720 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cco10g0129 865 PRINTS Alpha G protein (transducin) signature 745 754 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cco10g0129 865 PRINTS Alpha G protein (transducin) signature 453 468 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cco10g0129 865 ProSiteProfiles PH domain profile. 1 22 IPR001849 -
Cco10g0129 865 Gene3D - 480 630 IPR011025 GO:0007165(InterPro)
Cco10g0129 865 SMART galpha_1 446 843 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cco10g0129 865 MobiDBLite consensus disorder prediction 124 147 - -
Cco10g0129 865 MobiDBLite consensus disorder prediction 124 142 - -
Cco10g0129 865 PANTHER OS01G0977800 PROTEIN 8 422 IPR053057 -
Cco10g0129 865 Gene3D - 647 842 IPR027417 -
Cco10g0129 865 SUPERFAMILY Transducin (alpha subunit), insertion domain 479 629 IPR011025 GO:0007165(InterPro)
Cco10g0129 865 ProSiteProfiles G-alpha domain profile. 450 844 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cco10g0129 865 FunFam Extra-large guanine nucleotide-binding protein 3 480 630 - -
Cco10g0129 865 FunFam Extra-large guanine nucleotide-binding protein 3 644 842 - -
Cco10g0129 865 MobiDBLite consensus disorder prediction 69 88 - -
Cco10g0129 865 Pfam G-protein alpha subunit 446 832 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cco10g0129 865 MobiDBLite consensus disorder prediction 851 865 - -
Cco10g0129 865 MobiDBLite consensus disorder prediction 842 865 - -
Cco10g0129 865 SUPERFAMILY FYVE/PHD zinc finger 175 237 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0129 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1809 Cco-Chr5:26835772 Cco10g0129 Cco-Chr10:1185737 2.90E-52 dispersed
Cco09g1983 Cco-Chr9:34027241 Cco10g0129 Cco-Chr10:1185737 4.00E-177 dispersed
Cco10g0129 Cco-Chr10:1185737 Cco04g1404 Cco-Chr4:29443959 6.60E-206 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62