Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0132 ATGGCTACCAACAAGATTACTGTTACCAACGCATACAAGCACGATCAAATGTATTGGCGACAAAAGTTGATCAGGTACTCCCTCCGCCGCCGTTGCCGCTCTTTGGAAATGAGCGGAGAAGCTGAGCAGAAACTGGAGGCTCGGCGTCTCAGAGAATTGGCAGAGAAGAAGTTCAGAGATTCCAATCTCAAGTCTGCTCTCAAGTACGCCAAGCGAGCCCACCGCCTCGATCCAAACCTTGACGGCGCGGCCGAAATCCTCACTTCCTTACAGATTCTCCGAGTCGCCGCCGACTATCCGGATGACTGGTACCGGATTCTTCAGGTGGAGCCTTTCGCTCACATTAACACAATAAAAAAACAGTACAAGAAGCTCGCTCTGCTTCTGCATCCGGATAAGAATCCCTATTTCGGCTCCGAGGAGGCGTTCAAGCTCGTCGGCGAGGCGTTTCACTTTTTTTCCGATAAGGTCAGGAGGAAGGAGTACGATTTGAAGCTCCGGATTCGGATTCAGGACGAGAAGATTGGAGATGCGGATGTGGAGAGCGAGACGTTTTGGACTGCTTGCTCGACGTGCCGGCTTTTGCACCAGTTCGAAAAGAGGTACGTAGGGCATAATTTAGTCTGCCCTAATTGTAGGAAAAGTTTTAAGGCCGTTGAAGTTGTGTATAATGAACCTGAGATTAGGGAAATTGTGGTCATGGTTAGGGGTCGAAGGTTGAGGAATTTGAGTTCTAGGCAAAATTCTGGTAGTTTCGAGGGATTAAAAGAATCTGTGAATACTAATCAATTGAAGAGAAATACTACAGTGAGTAAGACGAATGGTGAGAAGAAGAAAGGTCTGGAGTTAAATGGAAAAGCTGGTTCTATAGAAGGTGATGTTAGAAATGGCGATTTAGAGGGAGTTGATAATGATGATGAGATATGTATAAGAAGATTAAGAAGTGGGAGTTTGAGGAAGAAGATGAGTAGTGTTGGTGAGGTTTTAGAGAGGTCTAAGCTGAAGCCTGTTAAAATGGAAGAGGAAATGATGACTTTGGCTGAATTACAGTCTCAAGTGATTCAGAAAGCACGAAAAGAGAAGATGAAGCTGAAGTTAAAGGAGGAGGAGGAAGCAGAGGAAAGAGAGAATAAGAGAAAGAAACGGGTTGAGGAGAATGACGATGACGACGAGAGACTAACTTTGAAAGAGATGGAAGGTCTACTACGGATTCGTAGGCAAGGAGCATCAAAGCGTCCCAGGTTTTTGGAGAATGCACAGCAAAAGAATTCCAAGAAGAATGTGAATCTGGAAACTCAGAAGCAAGAAGCTTCATGTAATGGTGTTGATTTGGATATGATGGTGGTGGAAGATTCAGATTTTTATGATTTTGACAAGGACAGAATGGAGAGAAGTTTCAAAAAAGGGCAAGTGTGGGCTATATATGATGATGATGATGGAATGCCTAGGCATTATGGTTTGATTGAAGAAGTTACTGTAAATCCTTTTGAAGTGAAAATGAGTTGGTTGGATGTTCAAAACAATGGAGATGAAAGACTACTTTGTTGGGAGAAGATGGGATTTCATGTATCTTGTGGTAGATTTAAGGTCACTAAAAAAACAACCATTCATTCATTGAACATTTTTTCTCATGTTGTGGATTGTGAAAGAGCAGCAAAGGAAGTCTATAGGATTTATCCCAAAAAGGGATCAGTATGGGCACTTTACAAAGAAGAAGGAGAAGGTTTGGATGCTGAGAAGAGAAGAAACCTTTTGAGTAAAGGGAAACGAACTTACGATATCGTGGTGTTTTTAACAACTTACAGTGAGATGCATGGTTTAAGCATGGCTTATCTTGAGAAGGTTGATGGTTACAAGACCATATTCAAGAGAAAAGAGATCGGTTATCATGCTATTAGATGGTTCGAAAAGGACAATATCCAATTATTTTCGCATCAAATTCCTGCACGGAAGCTTTCTATAGATGAGGCTCTTGGGCATCTGAAGGACTGTTGGGAACTTGATCCAGCTTCTCTTCCTTCGGATTTGCTAACCACCTATTGGAACAAATAG 2052 42.59 MATNKITVTNAYKHDQMYWRQKLIRYSLRRRCRSLEMSGEAEQKLEARRLRELAEKKFRDSNLKSALKYAKRAHRLDPNLDGAAEILTSLQILRVAADYPDDWYRILQVEPFAHINTIKKQYKKLALLLHPDKNPYFGSEEAFKLVGEAFHFFSDKVRRKEYDLKLRIRIQDEKIGDADVESETFWTACSTCRLLHQFEKRYVGHNLVCPNCRKSFKAVEVVYNEPEIREIVVMVRGRRLRNLSSRQNSGSFEGLKESVNTNQLKRNTTVSKTNGEKKKGLELNGKAGSIEGDVRNGDLEGVDNDDEICIRRLRSGSLRKKMSSVGEVLERSKLKPVKMEEEMMTLAELQSQVIQKARKEKMKLKLKEEEEAEERENKRKKRVEENDDDDERLTLKEMEGLLRIRRQGASKRPRFLENAQQKNSKKNVNLETQKQEASCNGVDLDMMVVEDSDFYDFDKDRMERSFKKGQVWAIYDDDDGMPRHYGLIEEVTVNPFEVKMSWLDVQNNGDERLLCWEKMGFHVSCGRFKVTKKTTIHSLNIFSHVVDCERAAKEVYRIYPKKGSVWALYKEEGEGLDAEKRRNLLSKGKRTYDIVVFLTTYSEMHGLSMAYLEKVDGYKTIFKRKEIGYHAIRWFEKDNIQLFSHQIPARKLSIDEALGHLKDCWELDPASLPSDLLTTYWNK 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1209088 1213409 - CcPI632755_10g001320.1 Cco10g0132 189090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0132 683 Coils Coil 416 436 - -
Cco10g0132 683 Pfam DnaJ domain 102 163 IPR001623 -
Cco10g0132 683 MobiDBLite consensus disorder prediction 365 391 - -
Cco10g0132 683 PANTHER BNAC03G44070D PROTEIN 44 672 - -
Cco10g0132 683 MobiDBLite consensus disorder prediction 414 434 - -
Cco10g0132 683 Coils Coil 354 387 - -
Cco10g0132 683 CDD DnaJ 102 155 IPR001623 -
Cco10g0132 683 SUPERFAMILY Chaperone J-domain 94 167 IPR036869 -
Cco10g0132 683 MobiDBLite consensus disorder prediction 412 434 - -
Cco10g0132 683 Gene3D DnaJ domain 93 189 IPR036869 -
Cco10g0132 683 ProSiteProfiles dnaJ domain profile. 102 166 IPR001623 -
Cco10g0132 683 PRINTS DnaJ domain signature 122 137 IPR001623 -
Cco10g0132 683 PRINTS DnaJ domain signature 138 158 IPR001623 -
Cco10g0132 683 PRINTS DnaJ domain signature 104 122 IPR001623 -
Cco10g0132 683 SMART dnaj_3 101 158 IPR001623 -
Cco10g0132 683 Pfam Domain of unknown function (DUF3444) 446 653 IPR024593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0132 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1599 Cco-Chr7:30012399 Cco10g0132 Cco-Chr10:1209088 3.20E-58 dispersed
Cco09g1794 Cco-Chr9:30711100 Cco10g0132 Cco-Chr10:1209088 6.40E-11 dispersed
Cco10g0132 Cco-Chr10:1209088 Cco11g1504 Cco-Chr11:27861368 1.20E-21 dispersed
Cco10g0132 Cco-Chr10:1209088 Cco06g0557 Cco-Chr6:6015414 5.30E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g749 . . . . . . . . Cmo06g00627 . . . . . . . . . . . . . . . Cla10g00123 Cam10g0123 Cec10g0132 Cco10g0132 Clacu10g0128 Cmu10g0975 Cre10g0385 Cone8ag0498 Cone12ag0497 . . Lsi07g01156 . Chy04g00132 . . . Bda07g00072 Bda09g00760 Bpe08g00803 Bpe11g00312 . . Sed02g0043 . Cmo19g00227 Cma06g00619 . Car06g00553 . . Cpe15g00185 Bhi05g00433 Tan07g2028 Cmetu04g1055 Lac11g2456 Hepe06g0983 . Lcy12g1980 Cla09g01084 Cam09g1138 Cec09g1145 Cco09g1163 . . Cre09g1101 . Csa03g04572 . Cme04g00155
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013922 1 1 1 0 0 1 1 1 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 24