Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0134 ATGATTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACCCCGCCTCCTACTACTACTACACAGGAGCAGACTACAACCACAAGCACTGGCACAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATTCCCCAGGGATCATATCCTTTTAGCCCCTTTGCAATGCCTTCTCCAAATGGAATCACTGAGGCCTCTGGCAATACAGCAGGCAGTTTGGAGGGAGACGTTAAGCCACCTGAAGTGAAGGAAAAGCTTCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAATAATGAGCTGGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCTATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCCAGACACTTCGGAAGTTGAAGTATCTCAGAATGGTAACTCAATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGCCATCCCATTGGCAACTGCTGGGGCCCCAGGAGTCGTTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCACTATCCCTGCTATGCGTGGAAAGGTTCAATCGACTCCAGTTGCTGGAGGACTAGTTACCGCTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGATTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAATTAGCACATCGAGCTGAAGCTTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAGCTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTCGGGGAAGTTCCGGGAAACGAAGAAGTAAGGGCCAGCAGGAACGGCCAGCATTTAAGTAACGAAACCACACAACCTACAGAGTCAGAGGTGCAAGTTGGTAACAAGAATTGA 1215 47.0 MIGSEMEKPPKDKETKTPPPTTTTQEQTTTTSTGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPQGSYPFSPFAMPSPNGITEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESASEGTSEGSYANSQNESQPKLGSRPDTSEVEVSQNGNSMHGTQNGGSNTQAMAAIPLATAGAPGVVPGPTTNLNIGMDYWGASSTIPAMRGKVQSTPVAGGLVTAGSRDSIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLGEVPGNEEVRASRNGQHLSNETTQPTESEVQVGNKN 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1220216 1225104 + CcPI632755_10g001340.1 Cco10g0134 189092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0134 404 Gene3D - 302 356 - -
Cco10g0134 404 MobiDBLite consensus disorder prediction 303 323 - -
Cco10g0134 404 Pfam Disordered region downstream of MFMR 137 264 - -
Cco10g0134 404 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0134 404 MobiDBLite consensus disorder prediction 364 404 - -
Cco10g0134 404 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0134 404 MobiDBLite consensus disorder prediction 17 42 - -
Cco10g0134 404 SMART brlzneu 299 363 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0134 404 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0134 404 MobiDBLite consensus disorder prediction 1 44 - -
Cco10g0134 404 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0134 404 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0134 404 MobiDBLite consensus disorder prediction 1 15 - -
Cco10g0134 404 Coils Coil 319 367 - -
Cco10g0134 404 MobiDBLite consensus disorder prediction 380 404 - -
Cco10g0134 404 MobiDBLite consensus disorder prediction 116 227 - -
Cco10g0134 404 PANTHER G-BOX-BINDING FACTOR 3-RELATED 22 389 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cco10g0134 404 MobiDBLite consensus disorder prediction 148 227 - -
Cco10g0134 404 Pfam G-box binding protein MFMR 12 98 IPR012900 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0135 Cco-Chr5:1089703 Cco10g0134 Cco-Chr10:1220216 5.00E-26 dispersed
Cco04g1697 Cco-Chr4:32135231 Cco10g0134 Cco-Chr10:1220216 2.70E-31 transposed
Cco10g0134 Cco-Chr10:1220216 Cco09g1167 Cco-Chr9:11316447 6.00E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60040 PF16596 MFMR_assoc 9.30E-47 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0134 K09060 - csv:101206627 698.738