Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0139 ATGGAACTTTTTCCAGCTCAACCAGATTTGTCTCTTCAAATTAGCCCTCCAAATTCATCAACAAGTTCAAAACCCTCTTCTAATTCAAATTGGAGAAGACAACCCATTTCTTCTATTTCTCCACAACCCCCTCTAGATTTGATGTTTTGGAACAATAATCATAATAATAAATTGCCTTCTCCTAACAATTCTTCTTCTAATTCTTCTAATTTTGACCCATCTATTAATTCTAATATTCCTAATTCCTCCAATTTCCTCCCCCACCATTTTCCTCCTACCGCCAATGGCGGTAGCGCCGGGCTCTTCCACCGCCATCTCCACGATCTTCACCCTCAAGGGCTTGGATTCTTGAGGCCTATTAGGGGAATTCCAGTGTATCAAAATCCTCCTTCCTCGTCCTCGTCTTCATCTTCCTCCTCTTACCCGATATTTGGAGGTAGCAGTGGCGGTGGCAGTGGTAGTCACTTTAGTTATAATGGTCTCCGATCGAGATTTTTGGCGAGGTTTCCGGCGAAACGGAGCATCCGAGCGCCGAGAATGCGGTGGACCACCACTCTCCATGCTCGTTTTGTTCATGCCGTTGAGCTTTTGGGTGGCCATGAAAGAGCAACACCAAAATCAGTTCTTGAGCTTATGGATGTCAAAGATCTCACCTTGGCTCATGTCAAGTCCCATTTGCAGATGTATAGAACTGTAAAGACTACTGATAGAGCTGCTGCTGCAGCTTCTTCTGGGAATTCGGACGATCTTTACGATCAAAATGGGTCATCTGGAGACACAACAAACGAAGATACAACGTATGAAAACGAGAAGTCGTCGCGAATGAGGCTTGATGCTCCGACCGGTGATCCAATGACCCATGGATTTAGACAAACGGTTGTTGGAGGACAAGATCATCATCGTTCTCATAACGACTTTCATGCCTTGTGGAGTAATTCTTCGAGAGAAGCTTTGTTCCAAGGCATACCAAATGATTCCTCTGAAAACCAACCCTCTCAGCTTGATCAGGAAGCCAAATGCTCAAGCCATGAGAGAACATCAGATGGAAGCTCATTGACAAATCTTTCAGCAGGAACAAGCCCAGAAAAACCCAATTTGGAATTCACATTAGGAATATCAATTTAA 1125 44.09 MELFPAQPDLSLQISPPNSSTSSKPSSNSNWRRQPISSISPQPPLDLMFWNNNHNNKLPSPNNSSSNSSNFDPSINSNIPNSSNFLPHHFPPTANGGSAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSSSSSSSSSYPIFGGSSGGGSGSHFSYNGLRSRFLARFPAKRSIRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAAAASSGNSDDLYDQNGSSGDTTNEDTTYENEKSSRMRLDAPTGDPMTHGFRQTVVGGQDHHRSHNDFHALWSNSSREALFQGIPNDSSENQPSQLDQEAKCSSHERTSDGSSLTNLSAGTSPEKPNLEFTLGISI 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1324670 1329246 - CcPI632755_10g001390.1 Cco10g0139 189097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0139 374 Pfam Myb-like DNA-binding domain 179 230 IPR001005 -
Cco10g0139 374 FunFam Myb family transcription factor 176 234 - -
Cco10g0139 374 MobiDBLite consensus disorder prediction 11 89 - -
Cco10g0139 374 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 372 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cco10g0139 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 178 231 IPR006447 GO:0003677(InterPro)
Cco10g0139 374 MobiDBLite consensus disorder prediction 240 263 - -
Cco10g0139 374 MobiDBLite consensus disorder prediction 320 374 - -
Cco10g0139 374 MobiDBLite consensus disorder prediction 320 337 - -
Cco10g0139 374 MobiDBLite consensus disorder prediction 1 91 - -
Cco10g0139 374 MobiDBLite consensus disorder prediction 240 301 - -
Cco10g0139 374 Gene3D - 177 234 - -
Cco10g0139 374 MobiDBLite consensus disorder prediction 345 363 - -
Cco10g0139 374 SUPERFAMILY Homeodomain-like 175 231 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0139 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1222 Cco-Chr5:11476135 Cco10g0139 Cco-Chr10:1324670 2.80E-38 dispersed
Cco10g0139 Cco-Chr10:1324670 Cco11g0081 Cco-Chr11:859632 5.00E-17 dispersed
Cco01g1631 Cco-Chr1:29022251 Cco10g0139 Cco-Chr10:1324670 1.30E-30 transposed
Cco10g0139 Cco-Chr10:1324670 Cco09g1174 Cco-Chr9:11466671 1.90E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g717 . . . . . . . . Cmo06g00638 . Cma02g01632 . Car02g01391 . . . . . . . . . . . Cla10g00132 Cam10g0130 Cec10g0139 Cco10g0139 Clacu10g0135 Cmu10g0982 Cre10g0392 . . . . . . Chy04g00122 . . Blo19g00245 . . . . . . . Cmo02g01676 Cmo19g00231 Cma06g00631 . Car06g00565 . . Cpe15g00191 . . . . . . . . . . . . . . . . . Cme04g00145
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60041 PF00249 Myb_DNA-binding 1.80E-05 CL0123 Cco TF