Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0147 ATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCCACGCAAGCCGTTGCTTCGGGCATATTTCAGATTAATACTGCCGTCGCTACGTTTCAGAGGCTTGTTAATACCTTAGGAACACCGAAGGATACGCCTGAGCTACGAGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACATCCGCTAAACTTAAACAAGCCAGCGAAATAGATCATCACGCTGAAGTTAATGCTAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAGGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCCCAAACTGTTCTACCTTCTAGCTACACAGCCGGCGAGGCAGATGCGAGCTCAGAAAAGAATCTTGAACAACGTGCCCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTAGACAATGAAATAGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATCTTTAAAGATCTTGCAGTTCTAGTCCATGAACAGGGAGCCATGATTGATGATATTGGATCCAACATAGAGGGTGCCCATGCTGCAACGTCACAGGGAACAACTCAGCTTGCAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGCTTGTTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTTGTTGCTTAA 825 43.52 MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQTVLPSSYTAGEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGAHAATSQGTTQLAKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1408786 1413196 + CcPI632755_10g001470.1 Cco10g0147 189105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0147 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco10g0147 274 SMART SynN_4 16 128 IPR006011 GO:0016020(InterPro)
Cco10g0147 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco10g0147 274 CDD SNARE_Qa 184 242 - -
Cco10g0147 274 Gene3D - 21 134 - -
Cco10g0147 274 PANTHER SYNTAXIN 36 264 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco10g0147 274 CDD SynN 24 147 IPR006011 GO:0016020(InterPro)
Cco10g0147 274 Pfam Syntaxin-like protein 30 130 IPR006011 GO:0016020(InterPro)
Cco10g0147 274 Pfam SNARE domain 218 269 IPR000727 -
Cco10g0147 274 SMART tSNARE_6 176 243 IPR000727 -
Cco10g0147 274 FunFam Syntaxin-22 like 21 134 - -
Cco10g0147 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Cco10g0147 274 Gene3D - 174 274 - -
Cco10g0147 274 FunFam Syntaxin-22 like 174 274 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0147 - - - 0.0