Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0149 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGACTTGGCCGAGAGAAGAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGACGATAGCTGCAACAGCACTGGCTCGGATGCCCCTTCGTCAGTAGCACAAGACCGGATGATCATTGTTGGGAATCAGCTCCCTATTCGAACGAATCGAGACGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGACTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGATGATGTTGCACAAATTCTTTTGGACCGATTCAAGTGTGTCCCGACGTTCCTTCCTCCTGAGCTTTTTACTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCACTGTTTCACTATATGCTTCCCCTGTCACCGGATCTTGGTGGCAGATTTGATCGGTCTCTTTGGCAAGCATATCTTTCGGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGACGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCATCTGAGATTTATCGGACCCTTCCCGTTAGAGACGAACTTCTTCGGGCACTATTGAACTCTGACCTTATTGGCTTCCACACGTTTGATTATGCTAGGCATTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTATCTTATCAATCTAAGCGAGGTTACATCGGGCTTGAATACTATGGTCGTACCGTGAGCATCAAGATTCTTCCTGTCGGTATTCATATAGGCCAGCTCCAAAGTGTTTTGAATCTCCCCGAGACTGTATCCAAAGTCGCAGAATTGCAAGAGCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGATATGGACATATTTAAGGGGATCAGCCTGAAACTTTTGGCATTTGAGCAATTGCTCCGACAACATCCTGAGAGATGGGGCAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGCAGAGGGAAAGATGTGCAGGAGGTTGTGGCTGAAACCACAGCGACAGTGGATAGAATTAATACAACATTTAGAAGGCCAGGATATGAGCCTGTGGTTTTGATAAACACTCCCTTGCAGTTTTACGAGCGAATTGCTTACTATGCAATTGCTGAGTGCTGCCTTGTTACTGCAGTGAGAGATGGGATGAATCTTATACCTTATGAGTATATTATATGTCGGCAAGGCAATGAGAAGCTTGACGGTGTTCTCGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAAGCAATGGATTCTGCCCTGGTAATCCCCGAGGCAGAAAAGCAATTGCGACATGAAAAGCATTATAGGTACGTTAGTACGCATGATGTTGCATATTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCCTGTAGAGACCATTCAATGAGGAGGTGCTGGGGCATAGGTTTCGGTTTAGGATTTCGAGTTATTGCCCTGGATCCAGATTTTAGGAAGCTTTCAGTTGATCATATTGTTTCAGTGTATAAGAGAACCTGCCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCTGGATCAATTAGCATGAATCCAACTTCAGAAGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCGTGTGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAATCATACTGCAGACTGGGAGACATGTGTAGCTGTGACGGATTTCGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGATGGCTCTACAATCGAAACTAAAGAGAGTGCGCTTGTTTGGAACTACCTTTACGCAGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAGGGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCAGACGAGGACATGTTCGAGGTGATAATGAATGCAAAAGCCACCCTTTCTCCCGGTGCCGAAGTATTCGGTTGTACCGTTGGCCAGAAACCAAGCAAGGCCAGGTATTACTTAGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTTACCCATGCGTCCGAGCACGCGACTAGAGCTGCTCTGCAGACGACGGCTCGTAGAGTGCAACGAGCAGCGCGCGCGATCAACCTCCTTGCGGGACGGCGTGCGACAGAGGCTCGACAACGACGCGATTCCGGCGTGCAGTCACGAGCGGCGTCGAATTCTCCGGCGGATCTAGTCAAGCAGCAGCGTGCGATTCTCTCGACGCCACAACCTGCATCCACGACGACGGACAGATTGTCGACGGCGCGAACACCTCTCCTTGCGTTAGTGGACAACCACTCGCAAACGAGCCATTCCGATTTAGATTCGAAAACTCACACTTCGAGTGACCTCAGATTGGGAATTGTGCTTTTGCTTCCCTTGATGGATTCTAGTGTTACTATCGCGACTGTAATTCTCAGTATCAGCTTGATTTTGAGCCGTGTTCTTTACGTTATATATTGGAGTGGTAGACCGCTTCGAAACAAAAGCTTGGGACCTGTTAGTACCCTCATTGTTTTAGGCTCAGGAGGTCACACGGCGGAGATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTACTGATAACATGAGTCTTCAAAAAGCTCGTACGTATGAGAACCAACTGGCTGATAAGACTGGGGCTGAGGTAGACGAGATTGCACAGTTTATGCAGATCTACAGAAGTAGGGAAGTAGGACAATCATATTTCACTTCTGTTTGGACAACTTTAATTGCCACATTGCATGCACTCTGGCTAATGCTCAAAATTAGACCTCAAGTGATTCTCTGCAATGGCCCTGGTACTTGTATCCCACTATGCGTAATTGCATTCATATTCAAGGTTCTGGGAATTAGATGGTCTTCAATTTTTTATGTGGAAAGCATTGCAAGAGTGAAGAGATTATCATTAAGTGGCTTGATTTTATACAAGTTATACATGGCTGATCAGTTCTTTGTGCAATGGCCACAACTTCAAAGGATGTATCCCCGCGCTCACTACGTCGGTTGTCTCATGTAG 3546 45.52 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRTNRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQILLDRFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVLNLPETVSKVAELQERFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVDRINTTFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDGVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPDFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCVAVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMRERGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKARYYLEDTHEILRMLQGLTHASEHATRAALQTTARRVQRAARAINLLAGRRATEARQRRDSGVQSRAASNSPADLVKQQRAILSTPQPASTTTDRLSTARTPLLALVDNHSQTSHSDLDSKTHTSSDLRLGIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADKTGAEVDEIAQFMQIYRSREVGQSYFTSVWTTLIATLHALWLMLKIRPQVILCNGPGTCIPLCVIAFIFKVLGIRWSSIFYVESIARVKRLSLSGLILYKLYMADQFFVQWPQLQRMYPRAHYVGCLM 1181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1434337 1444041 + CcPI632755_10g001490.1 Cco10g0149 189107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0149 1181 Gene3D Glycogen Phosphorylase B; 56 314 - -
Cco10g0149 1181 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 852 - -
Cco10g0149 1181 Gene3D - 593 710 IPR023214 -
Cco10g0149 1181 Gene3D - 723 905 IPR023214 -
Cco10g0149 1181 Pfam Oligosaccharide biosynthesis protein Alg14 like 1002 1180 IPR013969 GO:0006488(InterPro)
Cco10g0149 1181 Gene3D Glycogen Phosphorylase B; 315 531 - -
Cco10g0149 1181 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Cco10g0149 1181 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 314 - -
Cco10g0149 1181 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 842 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cco10g0149 1181 Gene3D Glycogen Phosphorylase B; 1001 1181 - -
Cco10g0149 1181 CDD GT20_TPS 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco10g0149 1181 FunFam Alpha,alpha-trehalose-phosphate synthase 316 531 - -
Cco10g0149 1181 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Cco10g0149 1181 MobiDBLite consensus disorder prediction 872 897 - -
Cco10g0149 1181 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco10g0149 1181 NCBIfam trehalose-phosphatase 593 840 IPR003337 GO:0005992(InterPro)
Cco10g0149 1181 NCBIfam HAD-IIB family hydrolase 596 798 IPR006379 -
Cco10g0149 1181 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0005992(InterPro)
Cco10g0149 1181 FunFam Trehalose-6-phosphate synthase 2 677 756 - -
Cco10g0149 1181 SUPERFAMILY HAD-like 594 839 IPR036412 -
Cco10g0149 1181 MobiDBLite consensus disorder prediction 883 897 - -
Cco10g0149 1181 FunFam UDP-N-acetylglucosamine transferase subunit ALG14 isogeny 1001 1181 - -
Cco10g0149 1181 CDD HAD_TPP 595 831 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0723 Cco-Chr3:7437906 Cco10g0149 Cco-Chr10:1434337 2.80E-123 dispersed
Cco05g2787 Cco-Chr5:35639349 Cco10g0149 Cco-Chr10:1434337 0.00E+00 dispersed
Cco06g1891 Cco-Chr6:29090685 Cco10g0149 Cco-Chr10:1434337 0.00E+00 dispersed
Cco07g0256 Cco-Chr7:2609373 Cco10g0149 Cco-Chr10:1434337 0.00E+00 dispersed
Cco10g0149 Cco-Chr10:1434337 Cco11g1775 Cco-Chr11:30452428 9.30E-126 dispersed
Cco10g0149 Cco-Chr10:1434337 Cco04g2173 Cco-Chr4:35466802 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0149 K16055 - csv:101207192 1684.08