Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0166 ATGGCGACCCATTTGGTGGATTCTCAAGAAGTCGATCGATTTTTGGCTCCTCCGTTGGGAATTGAAGGTGGGTCTTGGCCCTCGACTACTACTGAAGATGCCCTAACTCAACAATCTCTGGTTCCGCCTTCCTCTTGCCGTAGTGGGAATTTTTCTTTTTCGCCTATGGACGCCTCTGCTAATCAGTCTTGGGGTCCTTCGATAAACCCTACTGCGTCTTCGTCATTTTCAACTTACTCGTCTGATTCTGATGGACTCGAGCCATTGCCCTCTTTGCCGGGATCGTCTTTGGAGTGGTCTTCTTCAGAGGAAGCTTTCCCAGCAACTTCAGTGATTGCCCAAGAAACCGAATCTTTATCAGCGGGTGCGGGGCTTGCAAATTTGGGCAATACTTGTTTTATAAACGCAATCCTGCAGTGCCTCACTCATACTGCTCCATTTGTGGAGGGTCTTCGATCTGCCAATCATGATATGCCTTGTAACAGTGAAGATTTTTGTGTTCTTTGTGCAATTCGAGATCATATCGAGCTCTCCTTAACTTCTCTGGGTGGGATTATCTCCCCACTGAAACTTGTCAATAACTTGAACTACTTTTCATCTTTTTTCCGGAGATACCAGCAGGAGGATGCCCATGAGTTCATGCAGTGTTTCTTGGATAAACTTGAAAGATGCCTGGTTTCAGAAGCAAAGGATCGGGTTTCTTCTGAGGATGATGATCTAGTGAATAAGGTGTTTGGTGGTCGTCTTATAAGCAATCTATGGTGCTGTAATTGTGGCCATTGTTCTGAGACCCACGAGCCTTTGGTTGACCTGAGTTTGGAGATTGAGAATGTAGACTCCCTTTCTAGTGCTCTGGAGTCTTTCACCAAAGTGGAAAGGATTGGTGATCCAGAGACAAAATTTAAGTGTGAAAACTGCAAAGAAGAGGTGTTGGTGGAAAAGCAGCTTAAGCTGGAAAAAATCCCTTTGGTTACTACATTCCACTTAAAGAGATTCAAGGCTGATAGTTCTTTTGTTGAGAAAATAGAAAAGCACTTGGAGTTTCCATTAGAGTTAGATTTGCAGCCGTACACCCTCGGAGGCCAGGATGCAGAGGTGGAGCTCAAGTATGAATTGTATGCCATTGTGGAACACACAGGGTTTTCCTCTACTTCTGGGCATTACTTCAGCTTTGTTCGCTCCTCTCCTGATATGTGGCACAGAATGGATGACTCATTGGTTACTCCGGTCACCGAAGATTATGTGCTATCACGTGAGGCCTACATTCTGTTATATAAGAGGAAGGGGACTTCGTGGTTCTCAAGTTTAATCCAACGACCAGATCCTTGCTTGAATTCAGATTCCTCAAATCCATCACCCAAGTCAGTTTTGCAAAATATCAATACTGTTCACTCTTCATTTGCTTCTGAGTCTAATGTCAATAATGAAACTATGAATGCACCGGCTGATACTTTGCAACCGAGTCCTCGATTTTCTTGTGAAATGGGGAATCAAGATGTTGGTGCCAATGATTTGGAAAATGCTACCTCTGCTAACTTGAATATATTTGAGAGTGCCACAACCAAGTCTTCTCCCATTGTTACTAAGAACCTCCGTTCGAATGGCGAAGATGATATCGATGGTTTTCATCCTCTATCGCCAATGAGATCTCCCAGCCCTGATAATAATTTCCAGACTCGAGAACCACAATATCGAATTCCAGTTGATCATCTGAAGACAGAAAAGTGCTCGACATCTGGACGGTCATTGAATAAAGGTGTGGAAGATTCTGAAAAAAAAGCAGCCCTGAGGTATGTTAAGAAGAACATGCCAGGTTCGAGAGGGTCGAAAATGATTGCTGCTATATTGGGATCTCAGAGTGAAGGCTCCTCCTTGAACAAGAAGAAGAGACTAAGGTCATTACCATGCAAAAGGTCAAGCCCACCTAATACTCGTCGCAAAACAAAGGTTGGAAATGAAGCCATGGGAGATGATACACCAACACCAACTCTGACTCCAACTCCGGCTTTGAGCTCATCATCAGAGGCTGCAAGTAGACATGTAGTGGTCGTCATGGATGGAATGGAAGAGTTCACCACAGAGCCACTCGAGTGGGCGTTGGAGAATGTCATTATGCCTGGTTGCGTCGTTACTCTCATCGGAGCCATGCCGTGGCTCAACATTCCTCTTTCATCCAAAACATGGTTGGATATTTGGCCAATAAATTTGAAGGACATGTCCTTTGAGAGAGGGGAAAGGGAGTACATCAGTGAAGCCAAGTATGCAAAACTTGAAGCTGTGACATCACTTTGTAGAAAATATGGGGTTGTGCCACAAAAAAAAGTTATAATGGGTCATCCACTTAGATTGCTTATTGTTGAGCAAATCTCCAGCCTTCATGCAACATGGGTTGTATTTGATAAGCATCAAAGAAGTAACAGAGCATTTTATGCCAAGAAAATTAAATCCAATATGGTGATGCTGAAAGAAGATGGAGGGGTTGATATGATCAATAGGGAGCCTGAATTTCCAACTGATTCCACTTTGGATTCCAAACAATCTTATTATTCATTGAATAGTTGA 2562 43.48 MATHLVDSQEVDRFLAPPLGIEGGSWPSTTTEDALTQQSLVPPSSCRSGNFSFSPMDASANQSWGPSINPTASSSFSTYSSDSDGLEPLPSLPGSSLEWSSSEEAFPATSVIAQETESLSAGAGLANLGNTCFINAILQCLTHTAPFVEGLRSANHDMPCNSEDFCVLCAIRDHIELSLTSLGGIISPLKLVNNLNYFSSFFRRYQQEDAHEFMQCFLDKLERCLVSEAKDRVSSEDDDLVNKVFGGRLISNLWCCNCGHCSETHEPLVDLSLEIENVDSLSSALESFTKVERIGDPETKFKCENCKEEVLVEKQLKLEKIPLVTTFHLKRFKADSSFVEKIEKHLEFPLELDLQPYTLGGQDAEVELKYELYAIVEHTGFSSTSGHYFSFVRSSPDMWHRMDDSLVTPVTEDYVLSREAYILLYKRKGTSWFSSLIQRPDPCLNSDSSNPSPKSVLQNINTVHSSFASESNVNNETMNAPADTLQPSPRFSCEMGNQDVGANDLENATSANLNIFESATTKSSPIVTKNLRSNGEDDIDGFHPLSPMRSPSPDNNFQTREPQYRIPVDHLKTEKCSTSGRSLNKGVEDSEKKAALRYVKKNMPGSRGSKMIAAILGSQSEGSSLNKKKRLRSLPCKRSSPPNTRRKTKVGNEAMGDDTPTPTLTPTPALSSSSEAASRHVVVVMDGMEEFTTEPLEWALENVIMPGCVVTLIGAMPWLNIPLSSKTWLDIWPINLKDMSFERGEREYISEAKYAKLEAVTSLCRKYGVVPQKKVIMGHPLRLLIVEQISSLHATWVVFDKHQRSNRAFYAKKIKSNMVMLKEDGGVDMINREPEFPTDSTLDSKQSYYSLNS 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1610930 1616227 - CcPI632755_10g001660.1 Cco10g0166 189124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0166 853 SUPERFAMILY Cysteine proteinases 123 427 IPR038765 -
Cco10g0166 853 Gene3D Cysteine proteinases 120 430 - -
Cco10g0166 853 MobiDBLite consensus disorder prediction 24 85 - -
Cco10g0166 853 Pfam Ubiquitin carboxyl-terminal hydrolase 123 425 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cco10g0166 853 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 124 139 IPR018200 GO:0004843(InterPro)
Cco10g0166 853 MobiDBLite consensus disorder prediction 620 672 - -
Cco10g0166 853 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 123 428 IPR028889 -
Cco10g0166 853 MobiDBLite consensus disorder prediction 1 98 - -
Cco10g0166 853 MobiDBLite consensus disorder prediction 658 672 - -
Cco10g0166 853 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 370 388 IPR018200 GO:0004843(InterPro)
Cco10g0166 853 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 96 479 IPR050164 GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)
Cco10g0166 853 FunFam Ubiquitin carboxyl-terminal hydrolase 20 119 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0166 K11855 - - csv:101210383 1125.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1577 Cco-Chr2:28456668 Cco10g0166 Cco-Chr10:1610930 3.20E-68 dispersed
Cco10g0166 Cco-Chr10:1610930 Cco11g0356 Cco-Chr11:3617722 9.10E-06 dispersed
Cco10g0166 Cco-Chr10:1610930 Cco11g1502 Cco-Chr11:27838018 4.50E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46