Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0168 | ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAAAACGCGTCGGTGATGGACGCTTTCATGAACTCCGATCTGTCCTCTTACTGGGCTCCATCCGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCGCCTCAGTCCTCCGCCTCCACCTCCACTCCCCCACCGGACCCGCCCAAGTCCCTCCCTGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGACGGCGCTAGGGAGAGTTGGACTTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGTGCGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCGAAAATGGTGTCGTCGGCGGCAGAGCAGGCTCATCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTAATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCTTTTGATAATGGAGTTTGGTTACCGAGTCAGGCGTTTTACAACTCCACACCGATTTGGGTTTCTGGCGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGGGCCAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCAAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCGTCGAGTACTATCGAGATGAAGGATTCCATTACCACCACCGTCCCTTCCGGCAACGTCCCGGCAAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATATCAGCGCGATCCAACAACCATCCCATCAAAAACAAAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCTCAAAGAACACCACCGCCGCCGCAACAACCACCACCGCCACCCCATCATTCAAGCCTGAATCCGGCGGGATGCTGAATTTCGGCAACGGAAACCTCTACTCTAGCCATTCACAGTATGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCCGGTAAGGTAAAATCCGGGGACTCAGACCACTCAGATCTCGAAGCATCGGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCTAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAGTTGAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCACTACTGGGCGATGCGGTTTCTTACATCAACGAGCTCAAATCAAAGCTCCAAATAGCGGAAACGGAGAAAACAGAGATGGGAAAACATTTAGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATTTCGGGAATTACCCGAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATCGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAGCAAGAAAAATCATCCGGCGGCAAGGCTGATGGCGGCGTTTAAGGATTTAGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCAACGGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTTAAAATGGCTCTCGTCGCCCGAGTCGGTGGCGGCGGCGGCAGCCATGGAATGATGTAA | 1968 | 50.15 | MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFDNGVWLPSQAFYNSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAADEGENDPSSMWISEPSSTIEMKDSITTTVPSGNVPAKPIHSENPSSSSLTENISAIQQPSHQKQSQSFLNFSDYGFESNPSKNTTAAATTTTATPSFKPESGGMLNFGNGNLYSSHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAETEKTEMGKHLELLKKEMGGKDFGNYPNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSSKKNHPAARLMAAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGSHGMM | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1645807 | 1647774 | + | CcPI632755_10g001680.1 | Cco10g0168 | 189126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0168 | 655 | PANTHER | MYC | 56 | 644 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER) | |
Cco10g0168 | 655 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 469 | 518 | IPR011598 | GO:0046983(InterPro) | |
Cco10g0168 | 655 | MobiDBLite | consensus disorder prediction | 296 | 319 | - | - | |
Cco10g0168 | 655 | MobiDBLite | consensus disorder prediction | 377 | 396 | - | - | |
Cco10g0168 | 655 | Gene3D | - | 468 | 545 | IPR036638 | GO:0046983(InterPro) | |
Cco10g0168 | 655 | FunFam | Transcription factor bHLH13 | 462 | 536 | - | - | |
Cco10g0168 | 655 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 472 | 539 | IPR036638 | GO:0046983(InterPro) | |
Cco10g0168 | 655 | Coils | Coil | 515 | 542 | - | - | |
Cco10g0168 | 655 | Pfam | Helix-loop-helix DNA-binding domain | 473 | 519 | IPR011598 | GO:0046983(InterPro) | |
Cco10g0168 | 655 | MobiDBLite | consensus disorder prediction | 422 | 479 | - | - | |
Cco10g0168 | 655 | MobiDBLite | consensus disorder prediction | 428 | 479 | - | - | |
Cco10g0168 | 655 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 253 | IPR025610 | - | |
Cco10g0168 | 655 | MobiDBLite | consensus disorder prediction | 350 | 410 | - | - | |
Cco10g0168 | 655 | SMART | finulus | 475 | 524 | IPR011598 | GO:0046983(InterPro) | |
Cco10g0168 | 655 | MobiDBLite | consensus disorder prediction | 50 | 65 | - | - | |
Cco10g0168 | 655 | MobiDBLite | consensus disorder prediction | 36 | 67 | - | - | |
Cco10g0168 | 655 | MobiDBLite | consensus disorder prediction | 350 | 369 | - | - | |
Cco10g0168 | 655 | CDD | bHLH_AtAIB_like | 466 | 542 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0168 | Cco-Chr10:1645807 | Cco10g1341 | Cco-Chr10:26392937 | 2.00E-08 | dispersed | |
Cco05g0096 | Cco-Chr5:823003 | Cco10g0168 | Cco-Chr10:1645807 | 9.30E-64 | transposed | |
Cco07g0023 | Cco-Chr7:253791 | Cco10g0168 | Cco-Chr10:1645807 | 1.00E-17 | transposed | |
Cco07g0081 | Cco-Chr7:822859 | Cco10g0168 | Cco-Chr10:1645807 | 1.30E-41 | transposed | |
Cco10g0087 | Cco-Chr10:768670 | Cco10g0168 | Cco-Chr10:1645807 | 5.50E-42 | transposed | |
Cco11g0761 | Cco-Chr11:8561938 | Cco10g0168 | Cco-Chr10:1645807 | 1.10E-19 | transposed | |
Cco11g1024 | Cco-Chr11:18992083 | Cco10g0168 | Cco-Chr10:1645807 | 4.30E-07 | transposed | |
Cco10g0168 | Cco-Chr10:1645807 | Cco09g1216 | Cco-Chr9:12304360 | 8.90E-211 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60045 | PF14215 | bHLH-MYC_N | 9.00E-52 | CL0161 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0168 | K13422 | - | csv:101205372 | 1107.82 |