Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0168 ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAAAACGCGTCGGTGATGGACGCTTTCATGAACTCCGATCTGTCCTCTTACTGGGCTCCATCCGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCGCCTCAGTCCTCCGCCTCCACCTCCACTCCCCCACCGGACCCGCCCAAGTCCCTCCCTGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGACGGCGCTAGGGAGAGTTGGACTTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGTGCGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCGAAAATGGTGTCGTCGGCGGCAGAGCAGGCTCATCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTAATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCTTTTGATAATGGAGTTTGGTTACCGAGTCAGGCGTTTTACAACTCCACACCGATTTGGGTTTCTGGCGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGGGCCAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCAAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCGTCGAGTACTATCGAGATGAAGGATTCCATTACCACCACCGTCCCTTCCGGCAACGTCCCGGCAAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATATCAGCGCGATCCAACAACCATCCCATCAAAAACAAAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCTCAAAGAACACCACCGCCGCCGCAACAACCACCACCGCCACCCCATCATTCAAGCCTGAATCCGGCGGGATGCTGAATTTCGGCAACGGAAACCTCTACTCTAGCCATTCACAGTATGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCCGGTAAGGTAAAATCCGGGGACTCAGACCACTCAGATCTCGAAGCATCGGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCTAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAGTTGAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCACTACTGGGCGATGCGGTTTCTTACATCAACGAGCTCAAATCAAAGCTCCAAATAGCGGAAACGGAGAAAACAGAGATGGGAAAACATTTAGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATTTCGGGAATTACCCGAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATCGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAGCAAGAAAAATCATCCGGCGGCAAGGCTGATGGCGGCGTTTAAGGATTTAGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCAACGGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTTAAAATGGCTCTCGTCGCCCGAGTCGGTGGCGGCGGCGGCAGCCATGGAATGATGTAA 1968 50.15 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFDNGVWLPSQAFYNSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAADEGENDPSSMWISEPSSTIEMKDSITTTVPSGNVPAKPIHSENPSSSSLTENISAIQQPSHQKQSQSFLNFSDYGFESNPSKNTTAAATTTTATPSFKPESGGMLNFGNGNLYSSHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAETEKTEMGKHLELLKKEMGGKDFGNYPNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSSKKNHPAARLMAAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGSHGMM 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1645807 1647774 + CcPI632755_10g001680.1 Cco10g0168 189126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0168 655 PANTHER MYC 56 644 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Cco10g0168 655 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983(InterPro)
Cco10g0168 655 MobiDBLite consensus disorder prediction 296 319 - -
Cco10g0168 655 MobiDBLite consensus disorder prediction 377 396 - -
Cco10g0168 655 Gene3D - 468 545 IPR036638 GO:0046983(InterPro)
Cco10g0168 655 FunFam Transcription factor bHLH13 462 536 - -
Cco10g0168 655 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 539 IPR036638 GO:0046983(InterPro)
Cco10g0168 655 Coils Coil 515 542 - -
Cco10g0168 655 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983(InterPro)
Cco10g0168 655 MobiDBLite consensus disorder prediction 422 479 - -
Cco10g0168 655 MobiDBLite consensus disorder prediction 428 479 - -
Cco10g0168 655 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Cco10g0168 655 MobiDBLite consensus disorder prediction 350 410 - -
Cco10g0168 655 SMART finulus 475 524 IPR011598 GO:0046983(InterPro)
Cco10g0168 655 MobiDBLite consensus disorder prediction 50 65 - -
Cco10g0168 655 MobiDBLite consensus disorder prediction 36 67 - -
Cco10g0168 655 MobiDBLite consensus disorder prediction 350 369 - -
Cco10g0168 655 CDD bHLH_AtAIB_like 466 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0168 Cco-Chr10:1645807 Cco10g1341 Cco-Chr10:26392937 2.00E-08 dispersed
Cco05g0096 Cco-Chr5:823003 Cco10g0168 Cco-Chr10:1645807 9.30E-64 transposed
Cco07g0023 Cco-Chr7:253791 Cco10g0168 Cco-Chr10:1645807 1.00E-17 transposed
Cco07g0081 Cco-Chr7:822859 Cco10g0168 Cco-Chr10:1645807 1.30E-41 transposed
Cco10g0087 Cco-Chr10:768670 Cco10g0168 Cco-Chr10:1645807 5.50E-42 transposed
Cco11g0761 Cco-Chr11:8561938 Cco10g0168 Cco-Chr10:1645807 1.10E-19 transposed
Cco11g1024 Cco-Chr11:18992083 Cco10g0168 Cco-Chr10:1645807 4.30E-07 transposed
Cco10g0168 Cco-Chr10:1645807 Cco09g1216 Cco-Chr9:12304360 8.90E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60045 PF14215 bHLH-MYC_N 9.00E-52 CL0161 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0168 K13422 - csv:101205372 1107.82