Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0178 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCAGCCACAATCCACTCCCCCTAACAGGATGATCCCCAACGCTTCTTATTCCACTAATTTGCCCAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAGATGATGTCTTCTGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCCTCTAAGCCCTCCGAATCTCCCAATGCGGCTTCTTATGATGGATCGCAGTCTGAATTGCGCACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCCCCTGATGGGAACATCGCCTTGGGTTTATCCCCAACCCCTATCACTTCTTCCGCCCTTCCTGGCGATTCCGCCGGCATGAACTCCCCGGATCCTCGCCCTAAGAAGAACAGGGGACGGCCGCCCGGTACAGGGAAGAGGCAGATGGATGCTTTGGGGACTGGTGGTGTTGGCTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGACATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGTGCTGTTTGCAATGTTACACTTCAACCTGCAATGTCAGCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTCTTGATTTCTGACAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGCGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACAGCAGCATCGACAGTTCAGGTTATAGTCGGTAGCTTTCTTGTGGATGGGAAAAAGCTAGGAGCGAGTATACAGAAATCTGGGCCATCTTCTACATCTCCCAATATGTTGAACTTTAATACACCCGTGGCAACAGGCTGCCCATCTGAAGGTGCATCAAATAATTCATCCGATGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATCTACACCAATGCCAACCAACCAATGCATAATATGCAGATGTATCAACTATGGGGTAGCCGAAATCAATAA 1083 48.75 MDSRERSMPSVHQHQPQSTPPNRMIPNASYSTNLPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSALPGDSAGMNSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPAMSAGSVSYEGRYEIISLSGSFLISDNNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFNTPVATGCPSEGASNNSSDDNGGSPLSRGPGIYTNANQPMHNMQMYQLWGSRNQ 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1723080 1730102 + CcPI632755_10g001780.1 Cco10g0178 189136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0178 360 MobiDBLite consensus disorder prediction 10 92 - -
Cco10g0178 360 MobiDBLite consensus disorder prediction 118 132 - -
Cco10g0178 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 348 IPR039605 GO:0003680(InterPro)
Cco10g0178 360 SMART AT_hook_2 143 155 IPR017956 GO:0003677(InterPro)
Cco10g0178 360 SMART AT_hook_2 99 111 IPR017956 GO:0003677(InterPro)
Cco10g0178 360 MobiDBLite consensus disorder prediction 291 343 - -
Cco10g0178 360 MobiDBLite consensus disorder prediction 1 161 - -
Cco10g0178 360 Gene3D - 169 295 - -
Cco10g0178 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 280 IPR005175 -
Cco10g0178 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 281 - -
Cco10g0178 360 CDD DUF296 168 280 IPR005175 -
Cco10g0178 360 ProSiteProfiles PPC domain profile profile. 163 302 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0178 Cco-Chr10:1723080 Cco11g1956 Cco-Chr11:32080088 1.30E-46 dispersed
Cco10g0178 Cco-Chr10:1723080 Cco10g0179 Cco-Chr10:1738579 1.40E-11 tandem
Cco02g2338 Cco-Chr2:35805022 Cco10g0178 Cco-Chr10:1723080 4.50E-16 transposed
Cco08g1074 Cco-Chr8:22542348 Cco10g0178 Cco-Chr10:1723080 3.90E-61 transposed
Cco10g0178 Cco-Chr10:1723080 Cco05g0307 Cco-Chr5:2457360 1.20E-12 wgd
Cco10g0178 Cco-Chr10:1723080 Cco09g1230 Cco-Chr9:12522926 1.60E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0178 - - - 0.0