Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0179 | ATGGCTGGATTGGATTTAGGGAGTCGATATCTAACTCACCTTCGAACGCCAGTAGACGATCTAGTAAATCGTAGTGGTCATTTCTCTTCCGGTGACCACCAAGACGATGACGATCCCCATCAAGCCCTTGGTGGCCCGGGGGACGTCGTTGGCCGCCGCCCTCGCGGACGGCCACCCGGTTCGAAAAACAAGCCAAAGCCACCAGTAATCATCACCCGTGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTCGGGAGTGGCTGCGACGTTTTCGATTGCGTCGCCTCCTATGCCCGCCGGCGACAGCGTGGGATCTGTATTTTAAGTGGCAGCGGTAACGTCACTAACGTTGGCCTCCGCCAGCCAGCGGCGGCAGGGGCGGTGCTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGCTTTCTGGGTCGTTTCTGCCGCCGCCCGCTCCACCTGGCGCCACGAGTTTGACGATATTTTTAGCCGGAGGACAGGGGCAGGTTGTGGGAGGGACGGTGGCCGGGGAATTAACGGCGGCCGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAGAGATTGCCACTGGATGAGGAGGATCAGCAGCAAGCTCCGGCAGGCGGCAGCGGCGGAAGCAGCGGCGGAGTGGGTAATAACAACAACAATCCATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAACTTGCCACTGCATATGCAAAATGTTCAACTTCCACCCTTTTGA | 765 | 55.95 | MAGLDLGSRYLTHLRTPVDDLVNRSGHFSSGDHQDDDDPHQALGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPAGGSGGSSGGVGNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1738579 | 1739343 | - | CcPI632755_10g001790.1 | Cco10g0179 | 189137 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0179 | 254 | Gene3D | - | 79 | 208 | - | - | |
Cco10g0179 | 254 | MobiDBLite | consensus disorder prediction | 210 | 236 | - | - | |
Cco10g0179 | 254 | PIRSF | ESCAROLA | 10 | 250 | IPR014476 | GO:0003680(InterPro) | |
Cco10g0179 | 254 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 80 | 192 | IPR005175 | - | |
Cco10g0179 | 254 | ProSiteProfiles | PPC domain profile profile. | 76 | 212 | IPR005175 | - | |
Cco10g0179 | 254 | FunFam | AT-hook motif nuclear-localized protein | 79 | 206 | - | - | |
Cco10g0179 | 254 | CDD | DUF296 | 80 | 191 | IPR005175 | - | |
Cco10g0179 | 254 | MobiDBLite | consensus disorder prediction | 205 | 236 | - | - | |
Cco10g0179 | 254 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 35 | 222 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco10g0179 | 254 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 76 | 206 | - | - | |
Cco10g0179 | 254 | MobiDBLite | consensus disorder prediction | 21 | 70 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0068 | Cco-Chr6:630749 | Cco10g0179 | Cco-Chr10:1738579 | 5.80E-78 | dispersed | |
Cco10g0179 | Cco-Chr10:1738579 | Cco11g0685 | Cco-Chr11:7455160 | 1.10E-47 | dispersed | |
Cco10g0178 | Cco-Chr10:1723080 | Cco10g0179 | Cco-Chr10:1738579 | 1.40E-11 | tandem | |
Cco10g0179 | Cco-Chr10:1738579 | Cco09g1233 | Cco-Chr9:12556308 | 3.70E-80 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0179 | - | - | - | 0.0 |