Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0179 ATGGCTGGATTGGATTTAGGGAGTCGATATCTAACTCACCTTCGAACGCCAGTAGACGATCTAGTAAATCGTAGTGGTCATTTCTCTTCCGGTGACCACCAAGACGATGACGATCCCCATCAAGCCCTTGGTGGCCCGGGGGACGTCGTTGGCCGCCGCCCTCGCGGACGGCCACCCGGTTCGAAAAACAAGCCAAAGCCACCAGTAATCATCACCCGTGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTCGGGAGTGGCTGCGACGTTTTCGATTGCGTCGCCTCCTATGCCCGCCGGCGACAGCGTGGGATCTGTATTTTAAGTGGCAGCGGTAACGTCACTAACGTTGGCCTCCGCCAGCCAGCGGCGGCAGGGGCGGTGCTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGCTTTCTGGGTCGTTTCTGCCGCCGCCCGCTCCACCTGGCGCCACGAGTTTGACGATATTTTTAGCCGGAGGACAGGGGCAGGTTGTGGGAGGGACGGTGGCCGGGGAATTAACGGCGGCCGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAGAGATTGCCACTGGATGAGGAGGATCAGCAGCAAGCTCCGGCAGGCGGCAGCGGCGGAAGCAGCGGCGGAGTGGGTAATAACAACAACAATCCATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAACTTGCCACTGCATATGCAAAATGTTCAACTTCCACCCTTTTGA 765 55.95 MAGLDLGSRYLTHLRTPVDDLVNRSGHFSSGDHQDDDDPHQALGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPAGGSGGSSGGVGNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1738579 1739343 - CcPI632755_10g001790.1 Cco10g0179 189137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0179 254 Gene3D - 79 208 - -
Cco10g0179 254 MobiDBLite consensus disorder prediction 210 236 - -
Cco10g0179 254 PIRSF ESCAROLA 10 250 IPR014476 GO:0003680(InterPro)
Cco10g0179 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 192 IPR005175 -
Cco10g0179 254 ProSiteProfiles PPC domain profile profile. 76 212 IPR005175 -
Cco10g0179 254 FunFam AT-hook motif nuclear-localized protein 79 206 - -
Cco10g0179 254 CDD DUF296 80 191 IPR005175 -
Cco10g0179 254 MobiDBLite consensus disorder prediction 205 236 - -
Cco10g0179 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 222 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco10g0179 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
Cco10g0179 254 MobiDBLite consensus disorder prediction 21 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0068 Cco-Chr6:630749 Cco10g0179 Cco-Chr10:1738579 5.80E-78 dispersed
Cco10g0179 Cco-Chr10:1738579 Cco11g0685 Cco-Chr11:7455160 1.10E-47 dispersed
Cco10g0178 Cco-Chr10:1723080 Cco10g0179 Cco-Chr10:1738579 1.40E-11 tandem
Cco10g0179 Cco-Chr10:1738579 Cco09g1233 Cco-Chr9:12556308 3.70E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0179 - - - 0.0