Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0188 ATGGGAAGCGGAGTCTCCAGCCTCTTCTCGTGCCTCAAGCCGGAGACTCGCCCCGCCGCCCTTCCCGCCGACAATTCCGACATCCTCTTCTCCGCTTCCGAGCCACTTGACGAAACCCTAGGCCATTCCTTCTGCTACGTCCGCTCTTCCAACCGTTTCCTCTCTCCTTCTCATTCCGATCGCTTTCTTTCCCCTTCTCAGTCTCTTCGTTTTTCCCCTCCCCACGAACCGCCACTCGGTTCTAGGACTAGAACTGGCCCGCCGGAGACTGCCTTCAAGGCCATCTCGGGCGCTTCTGTCAGTGCTAATAGTTCTATTCCCAGATCTGTTCTTATGCTTGATGCTGTTTACGACGATGCCACTGACACTACGCTTGGGGCTTCTGGTGGCGGTTGTGGAGTCAGAGGGAGTATTCTTAATGGCTTTGAGAGTACTTCTTCTTTTACTGCTCTTCCGCTTCAGCCCGCCCCCAGAGGTGGGACTGAGCCTTTGGAACGAGGTGGGTTCTTTCTCTCTGGTCCAATTGAGCGTGGGGCGCTGTCTGGTCCGCTCGATGCTAATGTTGATGGTGCTGGTGCTGGTGGTGCTGGCGCCGGCGCTGGTGGTGGCAGTGGCGGTGGTGGGAGAGTCCATTTCTCCGCTCCGCTTGGTGGGATGTACGTGAAGAAGAAGAGGAAGAAGAGCATTTCGGGGTTTAGGAAGGCGTTTACGAGGAATTTTTCAGATAAGCGGCCGTGGGTGGTGCCGGTGTTGAATTTCGTTGGCCGGAAGGAGAGCTCGACGGCGGGAGATGAGCCGGAGGTGAGGAATGAGAGTGATGTTCAATGGGCACTTGGGAAGGCTGGAGAGGATCGGGTACATGTGGTTGTATCGGAAGAGCAAGGGTGGTTGTTCGTTGGAATTTATGATGGGTTCAATGGCCCGGATGCGCCTGAATTCTTGATGGGTAATCTCTACAGAGCTGTCTTCAATGAGCTTCAGGGATTGTTTTGGGAAATTGACGATAATGAGGAGGCTGCTGCTGCTGCTAATTCGAACCCTTCGAATGTGGCTGAAGAGAGCACAATCGGTGCGAACGAAACTAATGCTGACCCGTCCTCAAGAGCCGCTGGTCAAACCGTTGAAACTAACGGGAATGTTTCAGTAGTTGGAAATGAAGTGGAAGTGGAACAACCGGCTGCTGATCGAGGATCAGCAAAGAGGGTTACGTTTCAATCAGAGGATGTACCGGAGAACAGGCGGAGGCGGCGACTGTGGGAGTATTTAGCGGAGGACGATACACAGGACGGACTTGATCTCTCGGGGTCAGATAGGTTTGCATTTTCTGTTGATGACGCTCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGTTGTTATTGTCCAAGTTAAAACAAGGGTTGTCAAAGCATAAGGAGGGTCATGTTAAGACTTTGTTCCCGTGGAAGTATGGTTTGGGAGATAAAGAGAAGGCTGAGGCTGAGAATAGGGTGGAGGAGACATCATATCGAAGTGGTAAGAGGAGAAAGGAAGGTTTAATTGATCATGAGTTGGTGTTGGGGGCATTGTCACGGGCTCTTGAGATAACTGAATTAGCATATTTGGACATGACAGATAAGTTGCTTGATACGAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGCTGGTTGTGTTAATGAGGGATGAAGATGTGTATGTAATGAATCTGGGTGACAGCCGTGCAATTGTAGCACAGTATGAGCAACAAGAAGTTGGGCCTAGTGAAGACATGAAGGAGGTGGGCCTCAAAAGAACGGGCATGGAGGGTATAATTGAGGAGTCTACAACGAGTGAAGGGAAAATAACTCAAACGAATCAACCTTCAGCTCAGACGACGAGATTGATTGCATTGCAGCTATCCACTGATCATAGCACGAGCATTGAAGAAGAAGTAAGAAGAATAAAGAACGAGCACCCTGATGACAAACAGTGCATCGTCAACGATAGAGTGAAGGGCCGTCTAAAGGTTACGAGGGCATTTGGTGCAGGATTTTTGAAACAGCCAAAATTGAATGATGCATTACTGGAAATGTTTCGGAATGAGTATATTGGTACCGCACCATATTTATCATGCTTGCCTTCTCTTCGTCACCATAGACTCTGCCCGACGGATCAATTCATAGTGCTGTCATCTGATGGATTGTATCAATATCTAACCAATGAAGAAGTGGTTTCTTATGTTGAGAACTTTATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCAGCCAGAAAAGCAGGAATGGATTTTCATGAATTGTTGGACATCCCACAGGGCGATCGAAGAAAGTATCATGATGACGTTACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATATCTTTGA 2439 49.0 MGSGVSSLFSCLKPETRPAALPADNSDILFSASEPLDETLGHSFCYVRSSNRFLSPSHSDRFLSPSQSLRFSPPHEPPLGSRTRTGPPETAFKAISGASVSANSSIPRSVLMLDAVYDDATDTTLGASGGGCGVRGSILNGFESTSSFTALPLQPAPRGGTEPLERGGFFLSGPIERGALSGPLDANVDGAGAGGAGAGAGGGSGGGGRVHFSAPLGGMYVKKKRKKSISGFRKAFTRNFSDKRPWVVPVLNFVGRKESSTAGDEPEVRNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDNEEAAAAANSNPSNVAEESTIGANETNADPSSRAAGQTVETNGNVSVVGNEVEVEQPAADRGSAKRVTFQSEDVPENRRRRRLWEYLAEDDTQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGHVKTLFPWKYGLGDKEKAEAENRVEETSYRSGKRRKEGLIDHELVLGALSRALEITELAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNLGDSRAIVAQYEQQEVGPSEDMKEVGLKRTGMEGIIEESTTSEGKITQTNQPSAQTTRLIALQLSTDHSTSIEEEVRRIKNEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCLPSLRHHRLCPTDQFIVLSSDGLYQYLTNEEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1823425 1830043 - CcPI632755_10g001880.1 Cco10g0188 189146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0188 812 MobiDBLite consensus disorder prediction 344 372 - -
Cco10g0188 812 Gene3D - 252 807 IPR036457 -
Cco10g0188 812 SMART PP2C_4 267 798 IPR001932 -
Cco10g0188 812 SUPERFAMILY PP2C-like 279 801 IPR036457 -
Cco10g0188 812 ProSiteProfiles PPM-type phosphatase domain profile. 267 800 IPR001932 -
Cco10g0188 812 PANTHER PROTEIN PHOSPHATASE 2C 275 800 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco10g0188 812 Pfam Protein phosphatase 2C 633 763 IPR001932 -
Cco10g0188 812 CDD PP2Cc 512 800 IPR001932 -
Cco10g0188 812 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1007 Cco-Chr4:25693211 Cco10g0188 Cco-Chr10:1823425 2.30E-120 dispersed
Cco05g0717 Cco-Chr5:5911379 Cco10g0188 Cco-Chr10:1823425 3.30E-59 dispersed
Cco10g0188 Cco-Chr10:1823425 Cco10g2062 Cco-Chr10:34000408 1.20E-28 dispersed
Cco10g0188 Cco-Chr10:1823425 Cco02g2155 Cco-Chr2:34306865 9.80E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0188 - - - 0.0