Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0198 ATGATTGGATATTCATTAGCATATGTTGGGATTTGTGAAGAAGGGCTCTGTTTCAAAAGATCAGAGCCATTGCTTCTCTCTCTAAAGAGGTTGGAGAGAGTTGATTTGGTGCTGAAAAGCGATTTTCCGAAGGGGCTTAGAGTTCTCCTCCTTGATGGAGACAGCAGTTCTGCTGCTGAGATAAAAACAAAGCTTGAGGAAATGGAGTATGTTGTTGTGACTTACTGCAATGAGAATGATGCATTGTCAGCCATTTCGAGCAAACCCGAAACCTTTCATGTTGCCATTGTGGAGGTAACAACAAGTAATCACGACGGGAATTTTAAGTTTCTTGAAGCTGCTAAGGACTTGCCTACCATTATGATTTCAAATATCCATTGCCTAAGCACGATGATGAAGTGCATAGCACTTGGTGCGATCGAGTTCCTTCAGAAACCTCTCTCTGAGGACAAATTGAGGAATATTTGGCAACATGTTGTTCATAAGGCATTCAATGCAGGCGGTAGTCCCGTCCCCAATTCTTTAAAGCCTATTAAAGAATCCGTTGCCTCCATGCTGCATCTAGAATTAGAAAACAGCGAAAACGAGAATCAAATCCAAAAAGAGTTAGAAATATCGAGCCGCAACGATGACAATGATCATGAACTACTAGAAGGAAGTGATAAGTATCCAGCTCCTTCAACTCCTCAGCAGAAGCATGGAATGCGACTAGTGGATGATGGTGACTGCCATGATCAATTGAACAGTTCGCTCGAGAAAGAGTGCGGGGAGCAAGATGGGGAGTCAAAATCTGTCGAAACTACTTGTATCAATTCACTTGGTGAAGGTACTTCTCAAGTGGAGAACTCTCAATTACCTGACCAAGAAGGAATAAAAGAAGAAGAGAACTCTGCTGATGGTTGTGGGGCTGCAAGTAACAACGATCATGACGCACATGATCGAGACAATATTAGCAGTTCCGAAAAAAACAAGAGCAAACCATGCAGTGTCAATAATCCTTGTGGGACAAAAGTTAGTAGGAAGAAGCTGAAGGTAGACTGGACGCCCGAACTGCACCGAAAATTTGTACAGGCAGTAGAACAACTTGGAGTGAATCAAGCAATTCCTTCTCGAATTCTTGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAGTATCGAATGCATAAGAGGCACATCTTGCCAAAAGAAGAAGATGGGAGTTGGTCTCATTCAAAGGATCCAATGAAGAAGAACTACTATCCACAAAGACCCGTGATGGCCTTCCCCCCTCCTTATCATTCAAATCATATAATGCCAGTTGCTCCAATCTACCCGCCGTGGGGTCATATGGCTTGCCTCTCGCCCGGTGTCCAAATGTGGGTGCCACCCGGTTATCCGCCATGGCGACCACCGGAAATTTGGCCATGGAAGTCCTATCCTGGGATGCATGCTGATACATGGGGTTGCCCTGTGACACCACCTCCTCATAGCCCTCTCTCTTCTCATCCTCAACAGCATATTTCAAGATTTGAAAGCACTGATCCATACGATAAAAGCTACGGCATTGCATTCAGTCCTATCGATCTTCAACTGGCTGATGAAGAAATTGACAAAGTGGTGAAAGAGGCAATCAGCAAGCCATGGTTGCCATTGCCTTTGGGGTTAAAGCCACCTTCAACAGAAAGTGTACTGTCTGAGCTCTCAAGACAAGGCATCTCAACCGTTCCTTCTCACATCAATGGCTCTAAACTACTCCAATGA 1764 44.33 MIGYSLAYVGICEEGLCFKRSEPLLLSLKRLERVDLVLKSDFPKGLRVLLLDGDSSSAAEIKTKLEEMEYVVVTYCNENDALSAISSKPETFHVAIVEVTTSNHDGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAIEFLQKPLSEDKLRNIWQHVVHKAFNAGGSPVPNSLKPIKESVASMLHLELENSENENQIQKELEISSRNDDNDHELLEGSDKYPAPSTPQQKHGMRLVDDGDCHDQLNSSLEKECGEQDGESKSVETTCINSLGEGTSQVENSQLPDQEGIKEEENSADGCGAASNNDHDAHDRDNISSSEKNKSKPCSVNNPCGTKVSRKKLKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDGSWSHSKDPMKKNYYPQRPVMAFPPPYHSNHIMPVAPIYPPWGHMACLSPGVQMWVPPGYPPWRPPEIWPWKSYPGMHADTWGCPVTPPPHSPLSSHPQQHISRFESTDPYDKSYGIAFSPIDLQLADEEIDKVVKEAISKPWLPLPLGLKPPSTESVLSELSRQGISTVPSHINGSKLLQ 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2000341 2006335 + CcPI632755_10g001980.1 Cco10g0198 189156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0198 587 SUPERFAMILY CheY-like 44 162 IPR011006 -
Cco10g0198 587 Gene3D - 338 400 - -
Cco10g0198 587 ProSiteProfiles Response regulatory domain profile. 47 160 IPR001789 GO:0000160(InterPro)
Cco10g0198 587 Pfam Myb-like DNA-binding domain 344 394 IPR001005 -
Cco10g0198 587 FunFam Two-component response regulator 338 401 - -
Cco10g0198 587 FunFam Two-component response regulator-like APRR2 45 170 - -
Cco10g0198 587 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 339 398 IPR017930 -
Cco10g0198 587 MobiDBLite consensus disorder prediction 306 321 - -
Cco10g0198 587 Gene3D - 46 166 - -
Cco10g0198 587 MobiDBLite consensus disorder prediction 205 245 - -
Cco10g0198 587 NCBIfam myb-like DNA-binding domain, SHAQKYF class 342 397 IPR006447 GO:0003677(InterPro)
Cco10g0198 587 MobiDBLite consensus disorder prediction 205 220 - -
Cco10g0198 587 PANTHER TRANSCRIPTION ACTIVATOR GLK1 36 579 IPR044825 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(PANTHER)|GO:0045893(InterPro)
Cco10g0198 587 SUPERFAMILY Homeodomain-like 340 399 IPR009057 -
Cco10g0198 587 MobiDBLite consensus disorder prediction 273 335 - -
Cco10g0198 587 Pfam Response regulator receiver domain 48 154 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0198 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0198 Cco-Chr10:2000341 Cco11g0371 Cco-Chr11:3717960 7.10E-18 dispersed
Cco02g1074 Cco-Chr2:14426137 Cco10g0198 Cco-Chr10:2000341 3.70E-35 transposed
Cco10g0198 Cco-Chr10:2000341 Cco09g1279 Cco-Chr9:13921233 2.30E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60048 PF00072 Response_reg 2.90E-07 CL0304 Cco TF