Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0202 ATGGATTCGCAGCAGAACAATTTGTTTGAAACGGCATCTCAACCCGACACCGGAAACGACGCCTACACATTTCTTGAGTTCAACACACAGGGGGAAGACTTCGATTACCCTGAATTTCGCGATCCTATTAGGTCCCCTGTAGCGTGGCCGACTCCTTCCGATACGTTAGCGGATCATACGGACCGTGGTGGCGGGTCCGATCACCAGTCTGATGCGTCTCCGGTTTCGGCTGCACCAGGAAGTGCCACGAAAGGCCGGACTGGAGGAGGTCCGGGGAATACCGGCGGTAATAATCAAATGGTTGATGCATTGGCAGCCGGGATGAGTGGGTTGACGTTTGAGGATACTGGGGATGATGATAATTATGAGTTTGGGAAGGGGAATTTCACGGAGCATGCTTGCAGGTATTGTGGGGTTTCGAACCCGGCTTGCGTTGTGAGGTGTAACGTACCCTCGTGCCGTAAGTGGTTCTGCAATTCGCGAGGGAATACATCTGGGTCGCATATTGTGAATCATCTGGTCCGGGCAAAGCATAAGGAAGTTTGTCTTCACAAAGACAGTCCTCTGGGAGAAACAATTCTCGAGTGTTACAATTGTGGATGCCGAAATGTATTCCTCCTTGGATTTATTTCTGCAAAGACAGAAAGTGTGGTTGTTCTACTCTGTAGGGAACCTTGCTTAAGTGTAAATGCTCTTAAGGATATGAATTGGGACTTGAGTCAGTGGTGCCCTCTAATTGATGATAGGTGCTTCTTGCAGTGGCTGGTTAAGATTCCATCTGAGCAAGAGCAGTTGAGGGCACGGCAAATTAGTGCACAACAAATAAATAAAATTGAGGAACTTTGGAAGACAAACCCTGACGCATCCCTTGAAGATCTTGAAAAACCTGGTGTGGATGATGAACCACAGCCCGTAGCATTGAAATATGAAGATGCTTATCAGTATCAAAATGTATTTGCACCTCTTATCAAGCTTGAAGCTGACTACGATAAAATGATGAAAGAATCTCAGAGCAAGGATAATGTCACCGTACGCTGGGACATTGGCCTTAACAAGAAGAGGATAGCTTATTTTGTCTTTCCAAAGGAGGACAATGAGCTGCGTCTTGTACCTGGAGATGAGTTGAGGCTACGCTATTCTGGTGATGCAGCTCATCCAGCTTGGCACTCTGTCGGACATGTGATCAAGCTAACTGCACAGGAAGAGGTTGCACTTGAGCTTCGTGCAAGCCAGGGGGTCCCAGTTGATGTGGTCCATGGTTTTAGTGTTGATTTTGTGTGGAAAAGTACTAGCTTTGACCGAATGCAGGGAGCTATGAAGACGTTTGCTGTTGACGAGACGAGTGTTAGTGGTTATATCTACCATCACCTATTAGGACATGAAGTGGAGGTTCAGATGGTTCGCAATACACTTCCTCGTCGTTTTGGTGCTCCTGGTCTCCCAGAGCTCAATGCATCCCAAGTCTTTGCTGTTAAAAGTGTTCTTCAGAAGCCAATAAGCTTGATTCAGGGCCCTCCGGGTACTGGAAAAACTGTAACTTCTGCTGCCATAGTGTATCATATGGCCAAACAAGGCCAAGGGCAGGTACTGGTCTGTGCCCCTAGTAACGTGGCTGTGGACCAGCTGGCAGAGAAGATAAGTGCAACTGGGTTGAAGGTTGTTAGGCTATGTGCAAAATCAAGGGAAGCTGTAAGCTCTCCTGTGGAACACTTAACCCTTCACTATCAGGTTCGACATCTTGACACATCGGAAAGAAGTGAACTTCATAAGTTGCAACAATTGAAAGATGAACAAGGGGAGCTGTCTAGCAGTGATGAGAAAAAATATAAAGCCCTTAAGAGAGCAACAGAGAGGGAAATTTCACAGAGTGCAGATGTTATTTGTTGCACATGTGTTGGTGCTGGAGATCCTCGCTTGTCAAATTTTAGATTTCGCCAGGTTCTTATTGATGAGTCTACTCAGGCCACGGAACCTGAATGTCTCATTCCTCTTGTTCTTGGAGCAAAGCAGGCTGTTCTTGTTGGTGACCATTGCCAACTGGGACCTGTCATTATGTGCAAAAAAGCAGCACGTGCAGGGCTGGCTCAGTCCCTCTTTGAGCGTCTTGTTCTTCTTGGTGTGAAGCCAATTAGGTTGCAGGTCCAATATCGTATGCACCCATCGCTTTCTGAATTTCCTTCTAACAGCTTCTATGAGGGAACACTACAAAATGGAGTTACCATCAACGAAAGGCAATCAACAGGCATTGACTTCCCATGGCCAGTTCCCAACCGTCCAATGTTCTTCTATGTTCAGATGGGACAAGAGGAGATAAGTGCCAGTGGAACTTCCTACCTAAATAGGACTGAGGCAGCAAATGTAGAAAAAATTGTGAGCACTTTCTTAAGGAGTGGCGTAGTCCCTAGTCAGATTGGAGTTATCACACCGTATGAGGGGCAAAGAGCTTACATTGTGAACTATATGTCAAGGAATGGTGCTCTCAGACAGCAACTTTACAAAGAAATTGAGGTTGCAAGCGTGGATTCATTTCAAGGAAGGGAAAAAGATTACATCATATTGTCATGTGTGAGGAGTAACGAACATCAGGGCATTGGATTCCTTAACGATCCTCGCAGGCTCAATGTGGCTTTAACACGAGCTCGATATGGTATCGTCATTCTTGGAAACCCAAAGGTTTTGAGTAAACAACCACTGTGGAATAGCTTATTGACACATTACAAGGAACATGAGTGCTTGGTTGAGGGTCCCTTGAATAATTTGAAACAAAGCATGATTCAATTTCAGAAGCCTAAGAAGATATACAATGATCGGCGTCTTTTCTTTGCTGGTGGACCTGGAGTTGTGCCAAATGATAATTTTGGACCTGTTGCCCCATCTGGCCCTAATGCTGATAGAAGAAGTAGTCGGGGTAGAGGTTCGTACTTCCCTCCTCACCTGCCGAATGGTGCCCAGAAGCCTGGAGTGCATGCATCTGGTTATCCTATGCCTCGAGTTCCCCTCCCGTCATTTCATGGTGGTCCCCCACAGCCGTATGCAATTCCAACTCGTGGAGCTGTACACGGACCAGTTGGTGCTGTTCCTCATGTTCCTCAACCAGGAAGTAGGGGTTTCGGGGCAGGGCGTGGAAATGCAGGTGCTCCTATTGGTAGTCAGCTTCCAAATCAGCAAGGCTCTCAGCAAAATATTGGAAACCTTGGTTCCACTTTTAACTTTCCTGGTTTGGAGAGTCCCAATAGCCAACCATCAGTGGGTGGTCCATTGTCTCAGCTTGGGTTTGTTAACAATATGCCTGTTCAGCCACCTACTCAAACATTTCGCGATGGGTACTCCATGGGAGGAATTTCTCAGGACTTCTTGGGCGATGACTTTAAAAGCCAGGGATCACATGTTCCATATAATGTCACTGATTTCTCCACTCAGGCATCTCAAACTGGATATCCCATTGATTATGTTAGTCAAGGAGCGCAGGGTGGCTTTCCAGGGAGCTTCCTGAACCAGAATTCTCAATCTGGATATTCCCGTTTTGGAACAGGAAATGATTTCATGTCACAGGACTACATGAACCATGGTTCACAAGGTTTATTTACTCAAGTTGGTTTCAGCGATCCCTCACTAGATGAAGCCTCCCAAAGTCACTATAATGTGACCAATGCAAACCCCCTACAGTCTCAGCAGGGCATGATGAATTCTCTCTACTCCCAGCCCTTTGCACATTACAATACACAGCCCTCGACCCTGCAGGCTCCACCACAGCAGCAGCCTCAGCAGGGACAGTGCTCTCAAAATCAGAAAATTCACTTTAGTGGTTGA 3810 46.54 MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDTLADHTDRGGGSDHQSDASPVSAAPGSATKGRTGGGPGNTGGNNQMVDALAAGMSGLTFEDTGDDDNYEFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDVVHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVSTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSGPNADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPQPYAIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSQLPNQQGSQQNIGNLGSTFNFPGLESPNSQPSVGGPLSQLGFVNNMPVQPPTQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQASQTGYPIDYVSQGAQGGFPGSFLNQNSQSGYSRFGTGNDFMSQDYMNHGSQGLFTQVGFSDPSLDEASQSHYNVTNANPLQSQQGMMNSLYSQPFAHYNTQPSTLQAPPQQQPQQGQCSQNQKIHFSG 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2043539 2054743 + CcPI632755_10g002020.1 Cco10g0202 189160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0202 1269 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Cco10g0202 1269 PANTHER DNA2/NAM7 HELICASE FAMILY 134 1118 IPR045055 GO:0000184(PANTHER)|GO:0003724(PANTHER)|GO:0005737(PANTHER)
Cco10g0202 1269 MobiDBLite consensus disorder prediction 951 994 - -
Cco10g0202 1269 FunFam Regulator of nonsense transcripts 1 717 928 - -
Cco10g0202 1269 Pfam AAA domain 585 685 IPR041677 GO:0004386(InterPro)
Cco10g0202 1269 Pfam AAA domain 694 890 IPR041679 -
Cco10g0202 1269 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 126 285 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Cco10g0202 1269 FunFam regulator of nonsense transcripts 1 homolog 338 426 - -
Cco10g0202 1269 MobiDBLite consensus disorder prediction 1034 1085 - -
Cco10g0202 1269 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Cco10g0202 1269 CDD 1B_UPF1-like 338 425 IPR040812 -
Cco10g0202 1269 MobiDBLite consensus disorder prediction 1 26 - -
Cco10g0202 1269 Gene3D - 568 620 - -
Cco10g0202 1269 MobiDBLite consensus disorder prediction 1244 1269 - -
Cco10g0202 1269 MobiDBLite consensus disorder prediction 1 100 - -
Cco10g0202 1269 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Cco10g0202 1269 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Cco10g0202 1269 Gene3D - 446 716 IPR027417 -
Cco10g0202 1269 Gene3D - 717 928 IPR027417 -
Cco10g0202 1269 Pfam Type III restriction enzyme, res subunit 482 552 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Cco10g0202 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 912 IPR027417 -
Cco10g0202 1269 CDD DEXXQc_UPF1 482 717 - -
Cco10g0202 1269 CDD SF1_C_Upf1 718 907 IPR047187 -
Cco10g0202 1269 Gene3D - 338 426 - -
Cco10g0202 1269 MobiDBLite consensus disorder prediction 1048 1085 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0202 K14326 - - csv:101214107 2510.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0643 Cco-Chr6:7107338 Cco10g0202 Cco-Chr10:2043539 3.60E-42 dispersed
Cco10g0202 Cco-Chr10:2043539 Cco11g0102 Cco-Chr11:1105056 6.00E-38 dispersed
Cco01g0567 Cco-Chr1:5591134 Cco10g0202 Cco-Chr10:2043539 4.10E-54 transposed
Cco04g0057 Cco-Chr4:1357963 Cco10g0202 Cco-Chr10:2043539 1.60E-40 transposed
Cco05g2341 Cco-Chr5:31916290 Cco10g0202 Cco-Chr10:2043539 2.50E-26 transposed
Cco09g0172 Cco-Chr9:1563964 Cco10g0202 Cco-Chr10:2043539 1.10E-36 transposed
Cco09g1030 Cco-Chr9:9852245 Cco10g0202 Cco-Chr10:2043539 1.00E-32 transposed
Cco09g1066 Cco-Chr9:10188163 Cco10g0202 Cco-Chr10:2043539 2.90E-23 transposed
Cco10g1696 Cco-Chr10:30493397 Cco10g0202 Cco-Chr10:2043539 1.10E-48 transposed
Cco11g0112 Cco-Chr11:1201447 Cco10g0202 Cco-Chr10:2043539 5.00E-06 transposed
Cco11g0126 Cco-Chr11:1349834 Cco10g0202 Cco-Chr10:2043539 3.10E-40 transposed
Cco11g1587 Cco-Chr11:28748039 Cco10g0202 Cco-Chr10:2043539 2.30E-41 transposed
Cco10g0202 Cco-Chr10:2043539 Cco05g0323 Cco-Chr5:2582444 3.80E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40