Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0211 ATGGAGGGTTTAATCAAGGGTCTCATAGATGTTGCAATCGGCCACGACGGCGACGACAACGATCAACAATCGGTTCCCCAGTCTCGCGACGACCGATCCAGATCCACTTGGGCTCAGGTGGTCACTGGGGAGGAAGATGGGGGAGATCGGAGACAGGGGTATGATCGGAATCGGAGGGACAATGAGGAAGAGGGTCGTTCACGGCGTGAGGAGTGGGAGGTTCAGGGTTCGAGGATTTCTGGTCAACGGCAACAGAGTGAATATGGTAGTGAGCATGGTTACAACAGAAACCAGTGGGCTAAAGAGGAGAGCTCCGAGGAGAAAAATGATGGTTGGGAGACTGTCCACAAAAAGCCGCCTAGGAGACAACACAAGGTGCAAAAAGATAATTGGGAAGGATATAAACGGCCTGCCAGTGAACAAAATTACTCCGATGAGGTGGAAGTTGGTGCTGAGCTAGAACCCTCAGAAGATGAGCTTGCTGATTTGTCCTATGCATGTAACAAGCTTTGGGAACTTGATTTAAATCGTTTGGTACCTGGAAAAGATTATGAAATTGATTGTGGTGAAGGGAAGAGGGTCAGTGGAAGGGAAGATATGGCACAAGGAAGCCTCTTTAGTTGGGTTAGCGAAGACGTATTTAGGAAGCCAACATTTTCACGCTTTTGTTCTCTACTTGATAACTACAATCCGTATCAAGGGAGCAAAGAAGTTGTGACACCTGAGGAAAAGCAAGAGCAGGAAGCATTCATTGAAGAAATTAGTAGAACTGCACCAATTAAGTACCTTCACAAGTATCTTTCATCCAAGGGAGTTGCATCCAATAACTATCAAGATTTTAAACGTTTACTGACTAGCCTGTGGTTCGATCTTTATGGTCGGGGTGGAACATCTGGTTCCTCTTCTGCTTTTGAGCATGTTTTTGTGGGAGAAATCAAGCAAAAAGGAGAACAAGAGGTTTCTGGTTTCCACAACTGGCTTCAGTTTTACCTTGAAGAAGCTAAAGGGAATGTTGACTATCAAGGTTACATTTTCCCCCGACGACGTGGCCAGTTTCCTGATTCAGAAACTCAATTGCTTACCATTCAGTTTGAATGGAATGGTGTTCTCAAATCTGTCTCAAGCACTTTAATAGGAGTTAGCCCTGAGTTTGAAGTTGCACTCTATACACTCTGCTTCTTCCTTGGTGGAGAGGATAACCATGTTGAGCTCGGACCGTATGCTGTTAATATCAAATGTTATCGATTAGGAAATAAAATCGGGGTTAGGTCGGGTTGTGAAATTAGAACACTTTTTTCTTATGGCTTCACTTATCAAGGGTTAGGTCAGCTCTGCCCGGGCCACGCCGGCGCCGGTGGTGAGATCGCGTCGCCCGACGCCCTTTGCACTCACCGCCGTTACGTTTTGATTTTTTTGTTTGTCAGAAAATTGTGTTCTCCGGCGACGAAGAAAATCAAATCAATGGCGCTTGATGAGCATATGTTCGAAGCTTTAAACCCTTCTCGTTTCATATCATTCTCTTTCCCCAATCCATGTAACTCTCATTCTTCTCTCCGAATTGCCGTGCTCGATTCGCCGATCGAACCCACCGGTTCCCCTTCGGTGGCCGCCATGTTCGTTCCGCCGGGCCTTGAAGCCGACTGGATTTTTTCCACGGAATCTGGACACTATCACCTTCTGTTCGATTCCCCTGGAATTTCGCGCTTGATTCTAGTCGGAGATCAAGAATCGGTGACCGGCCATGATTCTCTTCTGAACTACAAGCGTCAGGATTCGGCTTCGACCTGGAGTCGACTGGTGGTAAGTTTACAGCCACTTCTTCTTGCTTTATTTCCCAAATCATGTTTCAAAAATGGTATTCCTGAAGTTCCGATTCTTAGTTTCGTCGATAACGTGATATGTAGTGTAGTTTTAGAGAGATGCATCGGTTCTTCAGTCGGTGAATTTCTGGTTGAGAATGTGGAAATTGAGAGAGAATCATTTGAAACTAGGGAATTTAGGAGACGTTTGAGGTTCAAGAGAATGCCGAACTTGATTCAAACAGAAATTCGTATAATTCCTGAGGCTAATCTTAATCTAGATGGTGTTGAAATTCAAAACATCGAGTTCCAACCAGATACTAGGGTTTTGGTTCATCCTTACTTATCTCCAATGGCAGCAAGCCTTTCACTGATTGCCTCCTCCATTGACGAACAGATTCAAACTGGTCATAGACCGAAAGCCCTGTGTGTTGGAGTTGGGGGTGGGGCTCTGCTTTCCTTCCTTGCAACCCATTTGGATTTTGAAGTTGTGGGTGTGGAAATGGACATGGAGGTTCTCAGAGTTGCACAACAGTATTTTGGATTGGTAGAGAATGAATTTCTTCACATCTCCATTGGAGATGCCACTGAATTTCTTGAAAATGCTTCAAAGTCAAATAAGAAACAAAAGTGTGGATCCTTTGCTGTTCATATGTCTTCTGAGTATGATGTGATCATGGTTGATTTGGATTCAAGTGATGCTCAAAACGGTATGAGTTCGCCGCCATTGGAGTTTGTTGGGAGAGATGTTCTTCTGAGTGCTAGATCAGTTCTTTCTGAACATGGGATTCTTGTAATGAATGTGATTCCTCTTGACAAGTTGTTCTTTGAGACATTGGTAGATGAATTCAGATCAGTTTTTGATGATTTGTTCCAGATAGATGTTGATAATGGTGAAAATTTTGTTGTTATTGCTTCTGTGTGCCCAATCAAGTCTTTCCCTAATGTTACAAAGAATGAGATGAACAGCTTTTCATCCAGATTGAGATTACTCCTCTCAGGAGCATACATGGACTCCATAAAAAGGATATGA 2832 44.03 MEGLIKGLIDVAIGHDGDDNDQQSVPQSRDDRSRSTWAQVVTGEEDGGDRRQGYDRNRRDNEEEGRSRREEWEVQGSRISGQRQQSEYGSEHGYNRNQWAKEESSEEKNDGWETVHKKPPRRQHKVQKDNWEGYKRPASEQNYSDEVEVGAELEPSEDELADLSYACNKLWELDLNRLVPGKDYEIDCGEGKRVSGREDMAQGSLFSWVSEDVFRKPTFSRFCSLLDNYNPYQGSKEVVTPEEKQEQEAFIEEISRTAPIKYLHKYLSSKGVASNNYQDFKRLLTSLWFDLYGRGGTSGSSSAFEHVFVGEIKQKGEQEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLIGVSPEFEVALYTLCFFLGGEDNHVELGPYAVNIKCYRLGNKIGVRSGCEIRTLFSYGFTYQGLGQLCPGHAGAGGEIASPDALCTHRRYVLIFLFVRKLCSPATKKIKSMALDEHMFEALNPSRFISFSFPNPCNSHSSLRIAVLDSPIEPTGSPSVAAMFVPPGLEADWIFSTESGHYHLLFDSPGISRLILVGDQESVTGHDSLLNYKRQDSASTWSRLVVSLQPLLLALFPKSCFKNGIPEVPILSFVDNVICSVVLERCIGSSVGEFLVENVEIERESFETREFRRRLRFKRMPNLIQTEIRIIPEANLNLDGVEIQNIEFQPDTRVLVHPYLSPMAASLSLIASSIDEQIQTGHRPKALCVGVGGGALLSFLATHLDFEVVGVEMDMEVLRVAQQYFGLVENEFLHISIGDATEFLENASKSNKKQKCGSFAVHMSSEYDVIMVDLDSSDAQNGMSSPPLEFVGRDVLLSARSVLSEHGILVMNVIPLDKLFFETLVDEFRSVFDDLFQIDVDNGENFVVIASVCPIKSFPNVTKNEMNSFSSRLRLLLSGAYMDSIKRI 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2187042 2195635 + CcPI632755_10g002110.1 Cco10g0211 189169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0211 943 CDD XendoU 159 419 IPR018998 GO:0004521(InterPro)
Cco10g0211 943 CDD AdoMet_MTases 740 866 - -
Cco10g0211 943 MobiDBLite consensus disorder prediction 44 76 - -
Cco10g0211 943 Pfam Endoribonuclease XendoU 162 417 IPR018998 GO:0004521(InterPro)
Cco10g0211 943 SUPERFAMILY EndoU-like 161 420 IPR037227 -
Cco10g0211 943 MobiDBLite consensus disorder prediction 77 93 - -
Cco10g0211 943 Gene3D Vaccinia Virus protein VP39 687 932 IPR029063 -
Cco10g0211 943 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 730 909 IPR029063 -
Cco10g0211 943 MobiDBLite consensus disorder prediction 96 117 - -
Cco10g0211 943 PANTHER PLACENTAL PROTEIN 11-RELATED 101 421 IPR039787 GO:0004521(InterPro)|GO:0004521(PANTHER)
Cco10g0211 943 MobiDBLite consensus disorder prediction 12 28 - -
Cco10g0211 943 MobiDBLite consensus disorder prediction 1 131 - -
Cco10g0211 943 ProSiteProfiles Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile. 159 429 IPR018998 GO:0004521(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0211 K14648 - - csv:101208900 790.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0952 Cco-Chr8:21391967 Cco10g0211 Cco-Chr10:2187042 1.60E-194 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g578 . Blo03g00133 Bda06g01303 . . Bpe07g00202 . . Cmo06g00853 . . . . . . . . Bhi11g00099 . . . Hepe06g1068 Mch10g1611 . Cla10g00199 Cam10g0205 Cec10g0210 Cco10g0211 Clacu10g0208 Cmu10g1051 Cre10g0459 Cone8ag0441 . . . Lsi07g01239 . . Cme06g02510 . . . . . . . Bma12g00197 . . . Cma06g00830 . . . . . . . . . . . . . . . . . . . . Csa03g00213 Chy06g02107 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002601 1 2 2 2 2 1 2 2 1 2 2 1 2 3 2 2 1 2 2 1 3 2 2 3 2 3 2 2 2 2 58