Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0230 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGCCCTCCTGATAAGCCAGTATTATGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAACTCTAGCAAACTATACCCCTCTTCATGCTCGAGCGGATCCTGATGAGTATGAGGATAAAAGGATCTCTAGGTGGAAGAACTTGTCAATGGGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATTCCTGATCATGCTCAGAGCTTTCACAAGGCAGTGGATGAAGATACAAGTAATAGATCCAGTTCTGGGTCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGTGCAGATGCAAGTGATCTGACAGGTCCCTCGCAGTCAACAGCATGGGAGGCAATAGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGAGAATGAAACTCCAATGGTCTCCGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTGTAAATGAAGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTCAGAACAAGGTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTATTGGACAGGGGTTCTTGCAAGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCGTAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAGAATCAGCAAGAACTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAACTTCCGGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCAAAAAGAGAAGACTGCAAGACTTTGAGTAGGCTGGTGTTGTTGGATTTGTCAAAATCAAAATGGGTGGAGCGATATCATCTACTCAAGAAATGTAGTAGTGGAGAGTCTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTTATGAATGACAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACAAGGACTGCAATGAAAAGTCCCAAAAGGGTGATGACAAAGACAAGCGTGGAAAGCAAGGAACTTGTGGACAGCGATGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGTGGTTCCTTCACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGAGCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTTCTTCATCCACCCCTGAGTTTTGGTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTTTGCATCACTGA 1620 43.27 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDKRISRWKNLSMGKNKEVKLLKRKQYQDNGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAIVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEVHSESSILPVHYETQNKVVNFSTLGIGRKHSIGQGFLQEQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKTLSRLVLLDLSKSKWVERYHLLKKCSSGESVQGFAAASSSFMNDKRVLDGQNKKLSETRTAMKSPKRVMTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSEQDLLLDVRSNSSFPQAELLHPPLSFGAQQASNSSSSVNLRLLHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2419284 2426292 - CcPI632755_10g002300.1 Cco10g0230 189188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0230 539 Gene3D - 3 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco10g0230 539 Gene3D - 289 372 IPR038108 -
Cco10g0230 539 FunFam GATA transcription factor 27 3 85 - -
Cco10g0230 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0230 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0230 539 MobiDBLite consensus disorder prediction 110 124 - -
Cco10g0230 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cco10g0230 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0230 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 371 IPR044589 -
Cco10g0230 539 Pfam Asx homology domain 284 368 IPR028020 -
Cco10g0230 539 MobiDBLite consensus disorder prediction 103 124 - -
Cco10g0230 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0230 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0230 Cco-Chr10:2419284 Cco09g1334 Cco-Chr9:15555112 1.90E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60050 PF13919 ASXH 2.80E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0230 - - - 0.0