Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0242 ATGATGTACGGACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTTTGGAAACCATACGGCGCCATTTGTTGGGAGAATCCGACGCTTACCGATGTGGGAATTTCGCCCTCGCCGGAACCGCCTCGCCGGTTTTCTGCCGGAGCTCCAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTAAAAGAGGATGATTCCGAGGACATGGTCATCGCCGGCGTCCTCCGTGATGCCGTCAGTGTTGGTTGGGTTCCGTCGCTCGGCGCTTCGCCATCGGATGCCTTCAATTTTGGATTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATATTACCGGAAGTTAAGGTGGTGGTGGCGGAGGCGGCGGCGGCGACGCCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTCCGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCAGCAAAAAACGGAGCTCGGGTTTGGCTTGGAACGTTTGAGACGGCGGAGGATGCGGCACTTGCTTATGACCGCGCCGCTTATCGAATGCGTGGCTCGAAAGCTCTTCTCAATTTCCCACTTCGAGTTAATTCGGGCGAACCCGACCCGGTTAGAGTGACATCGAAACGGTCATCGCCTCGATCGTCGCCAGAGCCTACTTCATCGTTGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGAGGAAGAAGGCGGACGGCTCGGCAGTGACACCCGCTCTAGCTTCGCCGGAGTTGATTCAATTGGTGGTGGGGACCAGTGAATTGCAAGTGGAAGCTGGCGTGGCAAAGTGTACAAGTGGCGAGAAATGA 864 57.41 MMYGQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVIAGVLRDAVSVGWVPSLGASPSDAFNFGFSDVKPEPEILPPVNILPEVKVVVAEAAAATPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGSAVTPALASPELIQLVVGTSELQVEAGVAKCTSGEK 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2569187 2570050 - CcPI632755_10g002420.1 Cco10g0242 189200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0242 287 Gene3D AP2/ERF domain 146 208 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0242 287 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0242 287 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0242 287 PANTHER DNA-BINDING DOMAIN 132 236 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cco10g0242 287 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0242 287 MobiDBLite consensus disorder prediction 216 240 - -
Cco10g0242 287 SMART rav1_2 147 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0242 287 FunFam Ethylene-responsive transcription factor 2 146 206 - -
Cco10g0242 287 MobiDBLite consensus disorder prediction 212 255 - -
Cco10g0242 287 CDD AP2 146 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0242 287 Pfam AP2 domain 147 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0242 287 SUPERFAMILY DNA-binding domain 147 207 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0013 Cco-Chr5:131065 Cco10g0242 Cco-Chr10:2569187 3.50E-25 dispersed
Cco07g1775 Cco-Chr7:31915453 Cco10g0242 Cco-Chr10:2569187 2.40E-36 dispersed
Cco09g0734 Cco-Chr9:6719553 Cco10g0242 Cco-Chr10:2569187 2.40E-23 dispersed
Cco10g0242 Cco-Chr10:2569187 Cco06g0493 Cco-Chr6:5419972 6.30E-20 dispersed
Cco10g0242 Cco-Chr10:2569187 Cco10g0243 Cco-Chr10:2594665 1.30E-25 tandem
Cco01g0464 Cco-Chr1:4553458 Cco10g0242 Cco-Chr10:2569187 2.20E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60051 PF00847 AP2 1.20E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0242 K09286 - csv:101203663 437.187