Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0247 ATGGTTGGAGTAGAATCCAATCCATGGTCGATCGTCATTCCTGTTGATCAATCGCAGCTTCCATCGACTTCTTCTTTTCCGGCTGCCGGGACGGTGGCGACTTCTGTGAGAATTTCGTTATCTGTATTTCTTCCGTCGAGATCTTCTCCGATTTTTCCATTACTGGGGTTTGGTATAGGAATGAATGTTAGGGGCTTTTTATTTGAGGCTATGTATATTGAGGAACTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGGAATTCAGGGGTTATTGTTAGTAATTTGGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTACTTTTCTACCCGACTTTGCTTTACAATGTTTTTAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCTGATGTTCCCCGTTTGAAGGAGGTTGGCGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACTCTGGTTCCTTCAACTCTATATCGTGATCATGGAATTGATCATCTAACCATTCCGACAAGAGACTATTGCTTTGCACCTTTATTGAGTGACATTTGCATTGCTGTAAATTTCATCCACAAAAATGCATCACATGGACAGACTACATATGTTCACTGTAAAGCTGGACGAGGGCGTAGCACAACCATTGTTATTTGCTATCTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTATAAGCATGTGAAATCAATCAGGCCAAGGGTGCTTCTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTCTACCACCTGATTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGGAACTATCAGGATCATCGCATGATCTTATCGCATTTGATGATAGTTCTGTAGTTGTTGTAAAAGAATCCGATCTAGATGGATATGACCAAAGTATCAGCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTGGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCTTGTTTGTGGGTCAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCTAGGTGTTGGGAAGGGCTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA 1212 43.73 MVGVESNPWSIVIPVDQSQLPSTSSFPAAGTVATSVRISLSVFLPSRSSPIFPLLGFGIGMNVRGFLFEAMYIEELKEGELQSGEEGNSGVIVSNLESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPRLKEVGVRGVITLNEPYETLVPSTLYRDHGIDHLTIPTRDYCFAPLLSDICIAVNFIHKNASHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHLIVQKDVSFCHIDDLGKELSGSSHDLIAFDDSSVVVVKESDLDGYDQSISQSDMGDIWADLSVVCRVRVAGQAALTRISCLWVSYRAKHHSQKISGDDLGVGKGCSLSATHLEGFSVDIHVY 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2632763 2637011 - CcPI632755_10g002470.1 Cco10g0247 189205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0247 403 FunFam Dual specificity phosphatase domain protein 138 285 - -
Cco10g0247 403 ProSitePatterns Tyrosine specific protein phosphatases active site. 227 237 IPR016130 GO:0016311(InterPro)
Cco10g0247 403 Gene3D Protein tyrosine phosphatase superfamily 138 288 IPR029021 -
Cco10g0247 403 SMART dsp_5 141 282 IPR020422 GO:0006470(InterPro)
Cco10g0247 403 CDD PTPMT1 138 280 IPR044596 GO:0004721(InterPro)
Cco10g0247 403 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 71 358 - -
Cco10g0247 403 Pfam Dual specificity phosphatase, catalytic domain 178 280 IPR000340 GO:0016311(InterPro)
Cco10g0247 403 ProSiteProfiles Dual specificity protein phosphatase domain profile. 138 285 IPR020422 GO:0006470(InterPro)
Cco10g0247 403 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 206 274 IPR000387 GO:0016311(InterPro)
Cco10g0247 403 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 132 284 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0247 Cco-Chr10:2632763 Cco11g0221 Cco-Chr11:2153352 1.50E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0247 - - - 0.0