Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0247 | ATGGTTGGAGTAGAATCCAATCCATGGTCGATCGTCATTCCTGTTGATCAATCGCAGCTTCCATCGACTTCTTCTTTTCCGGCTGCCGGGACGGTGGCGACTTCTGTGAGAATTTCGTTATCTGTATTTCTTCCGTCGAGATCTTCTCCGATTTTTCCATTACTGGGGTTTGGTATAGGAATGAATGTTAGGGGCTTTTTATTTGAGGCTATGTATATTGAGGAACTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGGAATTCAGGGGTTATTGTTAGTAATTTGGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTACTTTTCTACCCGACTTTGCTTTACAATGTTTTTAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCTGATGTTCCCCGTTTGAAGGAGGTTGGCGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACTCTGGTTCCTTCAACTCTATATCGTGATCATGGAATTGATCATCTAACCATTCCGACAAGAGACTATTGCTTTGCACCTTTATTGAGTGACATTTGCATTGCTGTAAATTTCATCCACAAAAATGCATCACATGGACAGACTACATATGTTCACTGTAAAGCTGGACGAGGGCGTAGCACAACCATTGTTATTTGCTATCTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTATAAGCATGTGAAATCAATCAGGCCAAGGGTGCTTCTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTCTACCACCTGATTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGGAACTATCAGGATCATCGCATGATCTTATCGCATTTGATGATAGTTCTGTAGTTGTTGTAAAAGAATCCGATCTAGATGGATATGACCAAAGTATCAGCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTGGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCTTGTTTGTGGGTCAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCTAGGTGTTGGGAAGGGCTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA | 1212 | 43.73 | MVGVESNPWSIVIPVDQSQLPSTSSFPAAGTVATSVRISLSVFLPSRSSPIFPLLGFGIGMNVRGFLFEAMYIEELKEGELQSGEEGNSGVIVSNLESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPRLKEVGVRGVITLNEPYETLVPSTLYRDHGIDHLTIPTRDYCFAPLLSDICIAVNFIHKNASHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHLIVQKDVSFCHIDDLGKELSGSSHDLIAFDDSSVVVVKESDLDGYDQSISQSDMGDIWADLSVVCRVRVAGQAALTRISCLWVSYRAKHHSQKISGDDLGVGKGCSLSATHLEGFSVDIHVY | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2632763 | 2637011 | - | CcPI632755_10g002470.1 | Cco10g0247 | 189205 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0247 | 403 | FunFam | Dual specificity phosphatase domain protein | 138 | 285 | - | - | |
Cco10g0247 | 403 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 227 | 237 | IPR016130 | GO:0016311(InterPro) | |
Cco10g0247 | 403 | Gene3D | Protein tyrosine phosphatase superfamily | 138 | 288 | IPR029021 | - | |
Cco10g0247 | 403 | SMART | dsp_5 | 141 | 282 | IPR020422 | GO:0006470(InterPro) | |
Cco10g0247 | 403 | CDD | PTPMT1 | 138 | 280 | IPR044596 | GO:0004721(InterPro) | |
Cco10g0247 | 403 | PANTHER | PHOSPHATIDYLINOSITOL PHOSPHATASE | 71 | 358 | - | - | |
Cco10g0247 | 403 | Pfam | Dual specificity phosphatase, catalytic domain | 178 | 280 | IPR000340 | GO:0016311(InterPro) | |
Cco10g0247 | 403 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 138 | 285 | IPR020422 | GO:0006470(InterPro) | |
Cco10g0247 | 403 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 206 | 274 | IPR000387 | GO:0016311(InterPro) | |
Cco10g0247 | 403 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 132 | 284 | IPR029021 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0247 | Cco-Chr10:2632763 | Cco11g0221 | Cco-Chr11:2153352 | 1.50E-80 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0247 | - | - | - | 0.0 |