Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0249 ATGATGGCTGGGAAAGATGATAATCTTGGATTAAGCCTTGGATTGAGCTTTGATTCTCATCATTTACAGCTCAATCTCATGCCTTCTTCTTGGAATAACGATGCTTCTTCAGATCGGACATCGGAAACAGGGCGATCGCTACTCCGAGGCATCGATGTGAACCGGATGCCGCCGTCGTCAACGGCAGATTGTGAAGAGGAGGCGGCGATGTCGAGTCCTAACAGTACGGTTTCGAGTGTGAGTGGGAAACGGAGTGAACGAGAGATGAACGGCGAAGATCTGGACGGAGATAGAGCTTGTTCTAGAGGAATTAGTGATGAAGAAGACGGAGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGAAAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTGGCGTTGGCGAAACAGTTAGGTCTAACGCCAAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAAGTAGATTGCGAGTTTCTAAAGAGATGTTGTGAGAATCTAACGGAGGAGAATAGGCGGTTGCAAAAGGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCATGTGAGCGAGTCGCGGTCCCACCCTCCACGTCAGCCCAACCTACGCATGTGACACGAATAGGCCAGGCCCAACCTCAGGCCCACCACGCTCGGCCCATCCACATCAACCCCTGGGCCTCCGCCATCCCCGCCCGGCCCTTCAACGCCCTACACCCTCGCTCGTAA 837 51.02 MMAGKDDNLGLSLGLSFDSHHLQLNLMPSSWNNDASSDRTSETGRSLLRGIDVNRMPPSSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAQPTHVTRIGQAQPQAHHARPIHINPWASAIPARPFNALHPRS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2652289 2653910 - CcPI632755_10g002490.1 Cco10g0249 189207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0249 278 FunFam Homeobox-leucine zipper protein 18 101 175 - -
Cco10g0249 278 Pfam Homeodomain 114 168 IPR001356 GO:0003677(InterPro)
Cco10g0249 278 PRINTS Lambda-repressor HTH signature 141 150 IPR000047 GO:0003677(InterPro)
Cco10g0249 278 PRINTS Lambda-repressor HTH signature 150 166 IPR000047 GO:0003677(InterPro)
Cco10g0249 278 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677(InterPro)
Cco10g0249 278 Coils Coil 169 206 - -
Cco10g0249 278 CDD homeodomain 114 171 IPR001356 GO:0003677(InterPro)
Cco10g0249 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 2 246 IPR050762 -
Cco10g0249 278 MobiDBLite consensus disorder prediction 30 44 - -
Cco10g0249 278 Pfam HD-ZIP protein N terminus 2 88 IPR006712 GO:0005634(InterPro)
Cco10g0249 278 MobiDBLite consensus disorder prediction 85 116 - -
Cco10g0249 278 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco10g0249 278 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0249 278 SUPERFAMILY Homeodomain-like 103 171 IPR009057 -
Cco10g0249 278 MobiDBLite consensus disorder prediction 30 116 - -
Cco10g0249 278 MobiDBLite consensus disorder prediction 65 84 - -
Cco10g0249 278 SMART HOX_1 112 174 IPR001356 GO:0003677(InterPro)
Cco10g0249 278 Gene3D - 118 168 - -
Cco10g0249 278 SMART halz 170 213 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0052 Cco-Chr5:523969 Cco10g0249 Cco-Chr10:2652289 1.50E-72 dispersed
Cco09g1176 Cco-Chr9:11579859 Cco10g0249 Cco-Chr10:2652289 5.40E-08 dispersed
Cco10g0249 Cco-Chr10:2652289 Cco10g1745 Cco-Chr10:31007523 9.70E-50 dispersed
Cco10g0249 Cco-Chr10:2652289 Cco09g0363 Cco-Chr9:3298066 1.40E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60053 PF04618 HD-ZIP_N 1.00E-20 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0249 K09338 - csv:101223208 464.151