Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0249 | ATGATGGCTGGGAAAGATGATAATCTTGGATTAAGCCTTGGATTGAGCTTTGATTCTCATCATTTACAGCTCAATCTCATGCCTTCTTCTTGGAATAACGATGCTTCTTCAGATCGGACATCGGAAACAGGGCGATCGCTACTCCGAGGCATCGATGTGAACCGGATGCCGCCGTCGTCAACGGCAGATTGTGAAGAGGAGGCGGCGATGTCGAGTCCTAACAGTACGGTTTCGAGTGTGAGTGGGAAACGGAGTGAACGAGAGATGAACGGCGAAGATCTGGACGGAGATAGAGCTTGTTCTAGAGGAATTAGTGATGAAGAAGACGGAGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGAAAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTGGCGTTGGCGAAACAGTTAGGTCTAACGCCAAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAAGTAGATTGCGAGTTTCTAAAGAGATGTTGTGAGAATCTAACGGAGGAGAATAGGCGGTTGCAAAAGGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCATGTGAGCGAGTCGCGGTCCCACCCTCCACGTCAGCCCAACCTACGCATGTGACACGAATAGGCCAGGCCCAACCTCAGGCCCACCACGCTCGGCCCATCCACATCAACCCCTGGGCCTCCGCCATCCCCGCCCGGCCCTTCAACGCCCTACACCCTCGCTCGTAA | 837 | 51.02 | MMAGKDDNLGLSLGLSFDSHHLQLNLMPSSWNNDASSDRTSETGRSLLRGIDVNRMPPSSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAQPTHVTRIGQAQPQAHHARPIHINPWASAIPARPFNALHPRS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2652289 | 2653910 | - | CcPI632755_10g002490.1 | Cco10g0249 | 189207 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0249 | 278 | FunFam | Homeobox-leucine zipper protein 18 | 101 | 175 | - | - | |
Cco10g0249 | 278 | Pfam | Homeodomain | 114 | 168 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0249 | 278 | PRINTS | Lambda-repressor HTH signature | 141 | 150 | IPR000047 | GO:0003677(InterPro) | |
Cco10g0249 | 278 | PRINTS | Lambda-repressor HTH signature | 150 | 166 | IPR000047 | GO:0003677(InterPro) | |
Cco10g0249 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 110 | 170 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0249 | 278 | Coils | Coil | 169 | 206 | - | - | |
Cco10g0249 | 278 | CDD | homeodomain | 114 | 171 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0249 | 278 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 2 | 246 | IPR050762 | - | |
Cco10g0249 | 278 | MobiDBLite | consensus disorder prediction | 30 | 44 | - | - | |
Cco10g0249 | 278 | Pfam | HD-ZIP protein N terminus | 2 | 88 | IPR006712 | GO:0005634(InterPro) | |
Cco10g0249 | 278 | MobiDBLite | consensus disorder prediction | 85 | 116 | - | - | |
Cco10g0249 | 278 | ProSitePatterns | 'Homeobox' domain signature. | 145 | 168 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco10g0249 | 278 | Pfam | Homeobox associated leucine zipper | 170 | 204 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0249 | 278 | SUPERFAMILY | Homeodomain-like | 103 | 171 | IPR009057 | - | |
Cco10g0249 | 278 | MobiDBLite | consensus disorder prediction | 30 | 116 | - | - | |
Cco10g0249 | 278 | MobiDBLite | consensus disorder prediction | 65 | 84 | - | - | |
Cco10g0249 | 278 | SMART | HOX_1 | 112 | 174 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0249 | 278 | Gene3D | - | 118 | 168 | - | - | |
Cco10g0249 | 278 | SMART | halz | 170 | 213 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0052 | Cco-Chr5:523969 | Cco10g0249 | Cco-Chr10:2652289 | 1.50E-72 | dispersed | |
Cco09g1176 | Cco-Chr9:11579859 | Cco10g0249 | Cco-Chr10:2652289 | 5.40E-08 | dispersed | |
Cco10g0249 | Cco-Chr10:2652289 | Cco10g1745 | Cco-Chr10:31007523 | 9.70E-50 | dispersed | |
Cco10g0249 | Cco-Chr10:2652289 | Cco09g0363 | Cco-Chr9:3298066 | 1.40E-51 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60053 | PF04618 | HD-ZIP_N | 1.00E-20 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0249 | K09338 | - | csv:101223208 | 464.151 |