Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0252 ATGGAAGATCCTCTTCACAGATTCCAATTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGTGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCCGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGCTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCACCGCCGTCGCCGCCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG 681 46.99 MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSPPSDCFAYRGSLL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2726744 2727424 + CcPI632755_10g002520.1 Cco10g0252 189210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0252 226 CDD AP2 45 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0252 226 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0252 226 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677(InterPro)
Cco10g0252 226 MobiDBLite consensus disorder prediction 1 43 - -
Cco10g0252 226 SMART rav1_2 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0252 226 MobiDBLite consensus disorder prediction 25 43 - -
Cco10g0252 226 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0252 226 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0252 226 MobiDBLite consensus disorder prediction 8 24 - -
Cco10g0252 226 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Cco10g0252 226 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0252 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 184 IPR051032 -
Cco10g0252 226 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0249 Cco-Chr6:2676148 Cco10g0252 Cco-Chr10:2726744 5.20E-34 dispersed
Cco08g0155 Cco-Chr8:2485175 Cco10g0252 Cco-Chr10:2726744 5.90E-27 dispersed
Cco08g1797 Cco-Chr8:29091200 Cco10g0252 Cco-Chr10:2726744 1.30E-18 dispersed
Cco10g0252 Cco-Chr10:2726744 Cco11g0247 Cco-Chr11:2394036 1.30E-36 dispersed
Cco11g0878 Cco-Chr11:11124457 Cco10g0252 Cco-Chr10:2726744 1.10E-14 dispersed
Cco10g0252 Cco-Chr10:2726744 Cco06g1024 Cco-Chr6:14163526 7.70E-37 transposed
Cco10g0252 Cco-Chr10:2726744 Cco11g1567 Cco-Chr11:28561775 7.70E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60055 PF00847 AP2 5.10E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0252 - - - 0.0