Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0252 | ATGGAAGATCCTCTTCACAGATTCCAATTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGTGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCCGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGCTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCACCGCCGTCGCCGCCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG | 681 | 46.99 | MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSPPSDCFAYRGSLL | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2726744 | 2727424 | + | CcPI632755_10g002520.1 | Cco10g0252 | 189210 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0252 | 226 | CDD | AP2 | 45 | 103 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0252 | 226 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0252 | 226 | SUPERFAMILY | DNA-binding domain | 44 | 102 | IPR016177 | GO:0003677(InterPro) | |
Cco10g0252 | 226 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cco10g0252 | 226 | SMART | rav1_2 | 44 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0252 | 226 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Cco10g0252 | 226 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0252 | 226 | PRINTS | Ethylene responsive element binding protein signature | 67 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0252 | 226 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Cco10g0252 | 226 | FunFam | Ethylene-responsive transcription factor 2 | 43 | 102 | - | - | |
Cco10g0252 | 226 | Gene3D | AP2/ERF domain | 44 | 102 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0252 | 226 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 27 | 184 | IPR051032 | - | |
Cco10g0252 | 226 | Pfam | AP2 domain | 44 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0249 | Cco-Chr6:2676148 | Cco10g0252 | Cco-Chr10:2726744 | 5.20E-34 | dispersed | |
Cco08g0155 | Cco-Chr8:2485175 | Cco10g0252 | Cco-Chr10:2726744 | 5.90E-27 | dispersed | |
Cco08g1797 | Cco-Chr8:29091200 | Cco10g0252 | Cco-Chr10:2726744 | 1.30E-18 | dispersed | |
Cco10g0252 | Cco-Chr10:2726744 | Cco11g0247 | Cco-Chr11:2394036 | 1.30E-36 | dispersed | |
Cco11g0878 | Cco-Chr11:11124457 | Cco10g0252 | Cco-Chr10:2726744 | 1.10E-14 | dispersed | |
Cco10g0252 | Cco-Chr10:2726744 | Cco06g1024 | Cco-Chr6:14163526 | 7.70E-37 | transposed | |
Cco10g0252 | Cco-Chr10:2726744 | Cco11g1567 | Cco-Chr11:28561775 | 7.70E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60055 | PF00847 | AP2 | 5.10E-13 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0252 | - | - | - | 0.0 |