Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0272 ATGCAAAGAAAAATGGGGAAGGGGGAGTTGGAATTTTCAGCTGCTTTTTCTTCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGATTAAGAAAGGGGAAGAACAACAAGAACAAGAACTAGAAGAAGAACAAGAAGAAGGGCTTTCTTATTTTGTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTTGTGTTCCTTCACTTCCTCCGGAGACTCCTGCTGTTGAACCGGTCGCCGGAACTGGTGTTGGGAACGCCATTTTTCCAGGTGGATTGGAGCGATGTGGGGTTGGATTGGAAGATTTGGAGAGTATGTGGTCGGAAACAGCCGGCCCAGAACAGTCGTTTCTCCGATGGATCGCCGGAGATGTTGTTGAAGATCCCAGTCTAGGGAGTAAAAGTGTTTTGCAAAATGGGAATATACCCTTTGATTTGGATGGCAATGCCGGTATCGGAATGGTCGATCAGGGTTCCGAATTCGACACCGGTGCTGGTAATGTTCTCGCCAACATTAATCCTAATTTATCGTTTCCTCTTGCTGCTTGTGCTGGGTTTTCTGATGTTAATGTTAACAATAAGTCTCTTAGTAAAAGCACTTGTGGGGGGGTTGTTAATTACAAGAGTTCTAGTTTGGGTTTGAACAATCGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTACTGGTTCTCTTGAAAATCTTGTTGTTCCTGTTTCTGGGATGATTTATCCTCAGCAACTTCAGCCATTTGAGAGTCCTGATGAGAAACCTCAGAATTTGAATACTCAGGTTTTGTTGAACCAACATCAGCAGCCTCAGAACCCTAGTTTTTTTGTGCCATTGACGTTTGGTCAACAGGAACAGCAGCTCCAGCCTCAACTGAAGAGGCACAATTCGAGTGGAGGACTCGACCCCAACCCAAACGGGCAGATCCCAAAGGTTCCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAAGTGTTGCAACAGCAGCAGCAGCAGCAGCTTGGTTATCCACCGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCAAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGGCGTATCACAATCCCCCACAGCAACAGCATCAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAACAACCCAGTTAATCCTCCTCCACCTCGCTGCCCGACACCGTTTGATGTGATCTTCAAGATGGGTGCTTACAAGGTGTTTTCCGAAATCTCCCCTCTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCACTGCTTGAGGCCCTCGATGACGTTGATCGAATTCACATTGTAGATTTCGATATTGGTTTTGGAGCTCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCGGGGTGCACTGTCACTCAAAATCACTGCTTTTGCCTCTCCGTCCACTCACCATCCAATTGAACTCGGGCTTATGCGTGAAAATCTAACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTCGAAGTGGTTAACTTTGATTCTTTGAACCAGAACTCCTTTCCATTGCCATTTCCTCGAGCAAGCGAAAATGAGGCTATTGCAGTAAACTTCCCTTTATGGTGCTCATCAAATCAGCCAGCGATGCTTCCGACTCTCCTCCGTTTCATCAAGCAACTCTCACCGAAAATTGTGGTCTCACTGGACCGAGGGTGCGATCGAAGTGACCTTCCATTTCCTCAGCATATGCTTCAGGCCCTTCAGTCCTACATTAACCTCCTGGAATCTCTGGATGCTATCAATATGAATTCGGATGCTGTGAACAAGATTGAGAGGTTTCTTTTGCAACCCAGAATTGAAAGCACCATCCTCGGACGGCTTCGAGCACCTGAAAGAATGCCCCTCTGGAAGACACTCTTTGCCTCTGCTGGGTTTACGCCTGTAACCTTTAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGCCAGGCTTCCCTAGTTTTATGCTGGCAGCGTCGGGAGCTCATATCTGCTTCAGCTTGGAGGTGTTGA 2331 47.32 MQRKMGKGELEFSAAFSSSSPICSGFAEKWIKKGEEQQEQELEEEQEEGLSYFVLPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGGGGGGGCVPSLPPETPAVEPVAGTGVGNAIFPGGLERCGVGLEDLESMWSETAGPEQSFLRWIAGDVVEDPSLGSKSVLQNGNIPFDLDGNAGIGMVDQGSEFDTGAGNVLANINPNLSFPLAACAGFSDVNVNNKSLSKSTCGGVVNYKSSSLGLNNRHGNFNVQNPIFTGSLENLVVPVSGMIYPQQLQPFESPDEKPQNLNTQVLLNQHQQPQNPSFFVPLTFGQQEQQLQPQLKRHNSSGGLDPNPNGQIPKVPFMDPGNEIFLRNHQLQVLQQQQQQQLGYPPGLQFLPQQKAMSPKPKVVGLGDEMAYHNPPQQQHQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNRGALSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVVNFDSLNQNSFPLPFPRASENEAIAVNFPLWCSSNQPAMLPTLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTILGRLRAPERMPLWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3029320 3031808 - CcPI632755_10g002720.1 Cco10g0272 189230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0272 776 ProSiteProfiles GRAS family profile. 404 775 IPR005202 -
Cco10g0272 776 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 395 774 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco10g0272 776 Pfam GRAS domain family 414 775 IPR005202 -
Cco10g0272 776 MobiDBLite consensus disorder prediction 64 83 - -
Cco10g0272 776 MobiDBLite consensus disorder prediction 64 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0311 Cco-Chr6:3477868 Cco10g0272 Cco-Chr10:3029320 3.30E-137 dispersed
Cco07g0967 Cco-Chr7:22386898 Cco10g0272 Cco-Chr10:3029320 2.00E-59 dispersed
Cco07g0968 Cco-Chr7:22438746 Cco10g0272 Cco-Chr10:3029320 9.90E-59 dispersed
Cco10g0272 Cco-Chr10:3029320 Cco11g0745 Cco-Chr11:8265701 1.10E-39 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60057 PF03514 GRAS 5.20E-93 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0272 K27747 - csv:101218630 1338.94