Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0299 | ATGTCATCTTCTTCGATTCCTAACACTTTCTCTCTTCTTCCTCCTCCTCCTTCTTCTTCCGAGCAGCTTTGCTATGTCCATTGTAACATTTGCGACACCGTTTTAGCGGTGAGTGTTCCTTGTAGTAGTTTGTTCAAAAGGGTCACCGTTCGTTGTGGCTATTGCGCCAATCTTCTGCCGGTGAACATGTGTGGTGGCATGCTTCTCCCTTCTTCAAATCAGTTTCATGGCTTTGCTCACTCAACCCCTTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATTCAAATCCAAATCCAAATCCAAATCCAAATCCAAATCCAAATTTTCTGATGAACCAAGCAGAAGGAATTGATTTAACCATGGCCACTCGTGTAGCTAATGATCTTCCAAGGCAGCCTCCAAGCATAAATAGACCTCCAGAAAAGAGACAAAGGGTGCCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAGCGGATTAAGGCTGCCAATCCAGACATATCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTTCTTCTTCCTGA | 594 | 44.44 | MSSSSIPNTFSLLPPPPSSSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGMLLPSSNQFHGFAHSTPFLSPNTHNFLEEISNSNPNPNPNPNPNPNFLMNQAEGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGSSS | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3552306 | 3556504 | - | CcPI632755_10g002990.1 | Cco10g0299 | 189257 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0299 | 197 | MobiDBLite | consensus disorder prediction | 132 | 151 | - | - | |
Cco10g0299 | 197 | Pfam | YABBY protein | 19 | 194 | IPR006780 | GO:0007275(InterPro) | |
Cco10g0299 | 197 | MobiDBLite | consensus disorder prediction | 95 | 115 | - | - | |
Cco10g0299 | 197 | CDD | HMG-box_SF | 149 | 185 | - | - | |
Cco10g0299 | 197 | PANTHER | PROTEIN YABBY 6-RELATED | 19 | 196 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER) | |
Cco10g0299 | 197 | SUPERFAMILY | HMG-box | 135 | 188 | IPR036910 | - | |
Cco10g0299 | 197 | Gene3D | High mobility group box domain | 136 | 190 | IPR036910 | - | |
Cco10g0299 | 197 | FunFam | axial regulator YABBY 5-like | 133 | 191 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2647 | Cco-Chr5:34584211 | Cco10g0299 | Cco-Chr10:3552306 | 8.50E-28 | dispersed | |
Cco06g1303 | Cco-Chr6:23255525 | Cco10g0299 | Cco-Chr10:3552306 | 2.10E-37 | dispersed | |
Cco10g0299 | Cco-Chr10:3552306 | Cco11g0329 | Cco-Chr11:3311911 | 4.20E-39 | dispersed | |
Cco01g0399 | Cco-Chr1:3954180 | Cco10g0299 | Cco-Chr10:3552306 | 2.60E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60058 | PF04690 | YABBY | 1.30E-68 | CL0114 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0299 | K25796 | - | csv:101219601 | 340.887 |