Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0299 ATGTCATCTTCTTCGATTCCTAACACTTTCTCTCTTCTTCCTCCTCCTCCTTCTTCTTCCGAGCAGCTTTGCTATGTCCATTGTAACATTTGCGACACCGTTTTAGCGGTGAGTGTTCCTTGTAGTAGTTTGTTCAAAAGGGTCACCGTTCGTTGTGGCTATTGCGCCAATCTTCTGCCGGTGAACATGTGTGGTGGCATGCTTCTCCCTTCTTCAAATCAGTTTCATGGCTTTGCTCACTCAACCCCTTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATTCAAATCCAAATCCAAATCCAAATCCAAATCCAAATCCAAATTTTCTGATGAACCAAGCAGAAGGAATTGATTTAACCATGGCCACTCGTGTAGCTAATGATCTTCCAAGGCAGCCTCCAAGCATAAATAGACCTCCAGAAAAGAGACAAAGGGTGCCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAGCGGATTAAGGCTGCCAATCCAGACATATCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTTCTTCTTCCTGA 594 44.44 MSSSSIPNTFSLLPPPPSSSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGMLLPSSNQFHGFAHSTPFLSPNTHNFLEEISNSNPNPNPNPNPNPNFLMNQAEGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGSSS 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3552306 3556504 - CcPI632755_10g002990.1 Cco10g0299 189257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0299 197 MobiDBLite consensus disorder prediction 132 151 - -
Cco10g0299 197 Pfam YABBY protein 19 194 IPR006780 GO:0007275(InterPro)
Cco10g0299 197 MobiDBLite consensus disorder prediction 95 115 - -
Cco10g0299 197 CDD HMG-box_SF 149 185 - -
Cco10g0299 197 PANTHER PROTEIN YABBY 6-RELATED 19 196 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cco10g0299 197 SUPERFAMILY HMG-box 135 188 IPR036910 -
Cco10g0299 197 Gene3D High mobility group box domain 136 190 IPR036910 -
Cco10g0299 197 FunFam axial regulator YABBY 5-like 133 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2647 Cco-Chr5:34584211 Cco10g0299 Cco-Chr10:3552306 8.50E-28 dispersed
Cco06g1303 Cco-Chr6:23255525 Cco10g0299 Cco-Chr10:3552306 2.10E-37 dispersed
Cco10g0299 Cco-Chr10:3552306 Cco11g0329 Cco-Chr11:3311911 4.20E-39 dispersed
Cco01g0399 Cco-Chr1:3954180 Cco10g0299 Cco-Chr10:3552306 2.60E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60058 PF04690 YABBY 1.30E-68 CL0114 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0299 K25796 - csv:101219601 340.887