Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0310 ATGCAGTGCATTCTTACGCGCCGCCCTACAAAGCCCCGCCACCGCTCACCTCCAGAGACTCCCGCCGTCAAGCGCCTACTGGCCGATTCTTCTGCTACTCGCTCTTGTATTCTGGAGAAAGAGATTCTCGCCATGATAGCGTTGGTTAGATTTCGGAATTTATCGTACAAATTCCGAAACGAAACTGATTTAATTAGATGTTTTCATTCCGGAACGAATCTGAAATCCAATTCTCCGGATTCTTCCTCCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAGGCTGCAGCAGCTTCCTTCGGCGCGGTTCGGTACATGGTGGCGTATGCGAATCGGCATGCTTTTAGTTATGTGCCGCAAGTTGTTAGAGAGCAGAGAAGAGAGAGGAAGATGCTTAATCAATTGGAGAGTAAGGGTGTGATTAAATCGATTGAGCCATATCTATGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGCTAGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCCAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAACTGAGAAACGACATGGTTGAGATTATGGATAGGAAAAGAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGAATGTTTTGAAGGAGGCCAGGTTGAGATGTCTCAGGACAGTTGTTGTAGGGGATTTCAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTGTCTGTTGTTGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCAGTTGGAGAAGGAAGTGTTTGGTTTAGATGATATAGGCGGGGATGAAGATGTTGAAGAAGGTTCTGTTGATGGGGGACTTTGTAAGAATATGCAAAATGATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGATACTGAAACTGTTTCCCCACCATCATGGAAATGA 1236 43.69 MQCILTRRPTKPRHRSPPETPAVKRLLADSSATRSCILEKEILAMIALVRFRNLSYKFRNETDLIRCFHSGTNLKSNSPDSSSSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAVRYMVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRKRAECLVLVSDDSDFVNVLKEARLRCLRTVVVGDFNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKEVFGLDDIGGDEDVEEGSVDGGLCKNMQNDDRGAWWDLSSDADTETVSPPSWK 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3636416 3637707 - CcPI632755_10g003100.1 Cco10g0310 189268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0310 411 MobiDBLite consensus disorder prediction 1 21 - -
Cco10g0310 411 Pfam NYN domain 235 315 IPR021139 GO:0004540(InterPro)
Cco10g0310 411 SUPERFAMILY beta-beta-alpha zinc fingers 162 188 IPR036236 -
Cco10g0310 411 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 75 403 - -
Cco10g0310 411 ProSitePatterns Zinc finger C2H2 type domain signature. 165 186 IPR013087 -
Cco10g0310 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 191 IPR013087 -
Cco10g0310 411 CDD PIN_LabA-like 173 304 - -
Cco10g0310 411 Gene3D - 78 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2275 Cco-Chr5:31465470 Cco10g0310 Cco-Chr10:3636416 1.10E-57 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60060 PF01936 NYN 5.10E-10 CL0280 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0310 - - - 0.0